Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   GYN04_RS06500 Genome accession   NZ_CP048254
Coordinates   1245120..1245515 (-) Length   131 a.a.
NCBI ID   WP_250328358.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT530     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1243516..1244169 1245120..1245515 flank 951


Gene organization within MGE regions


Location: 1243516..1245515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN04_RS06490 (GYN04_06310) - 1243516..1244169 (+) 654 WP_123768249.1 IS1595 family transposase -
  GYN04_RS06495 (GYN04_06315) - 1244443..1244769 (+) 327 Protein_1263 hypothetical protein -
  GYN04_RS11975 - 1245039..1245186 (+) 148 Protein_1264 peptidase -
  GYN04_RS06500 (GYN04_06325) comE 1245120..1245515 (-) 396 WP_250328358.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13892.70 Da        Isoelectric Point: 10.8790

>NTDB_id=420242 GYN04_RS06500 WP_250328358.1 1245120..1245515(-) (comE) [Neisseria gonorrhoeae strain CT530]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIVPAKAKTHAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=420242 GYN04_RS06500 WP_250328358.1 1245120..1245515(-) (comE) [Neisseria gonorrhoeae strain CT530]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGTACCGGCGAAGGCGAAAACCCATGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

97.71

100

0.977
  comE Neisseria gonorrhoeae MS11

97.71

100

0.977
  comE Neisseria gonorrhoeae MS11

97.71

100

0.977
  comE Neisseria gonorrhoeae MS11

97.71

100

0.977

Multiple sequence alignment