Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GYN05_RS10575 Genome accession   NZ_CP048250
Coordinates   2025252..2025635 (-) Length   127 a.a.
NCBI ID   WP_284445949.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT532     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2020252..2030635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN05_RS10555 (GYN05_10320) - 2020439..2021380 (-) 942 WP_003686969.1 ABC transporter ATP-binding protein -
  GYN05_RS10560 (GYN05_10325) - 2021389..2022264 (-) 876 WP_003686971.1 NUDIX domain-containing protein -
  GYN05_RS10570 (GYN05_10335) thiC 2022862..2024763 (+) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  GYN05_RS10575 (GYN05_10340) pilE 2025252..2025635 (-) 384 WP_284445949.1 pilin Machinery gene
  GYN05_RS10580 (GYN05_10345) - 2025987..2026385 (-) 399 Protein_2052 pilin -
  GYN05_RS10585 (GYN05_10350) - 2026790..2027241 (-) 452 Protein_2053 pilin -
  GYN05_RS10590 (GYN05_10355) - 2027733..2028094 (-) 362 Protein_2054 pilin -
  GYN05_RS10595 (GYN05_10360) - 2028121..2028450 (-) 330 Protein_2055 pilin -
  GYN05_RS10600 (GYN05_10365) - 2028454..2028762 (+) 309 Protein_2056 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13705.54 Da        Isoelectric Point: 9.9779

>NTDB_id=420211 GYN05_RS10575 WP_284445949.1 2025252..2025635(-) (pilE) [Neisseria gonorrhoeae strain CT532]
MPAGILKHRPKKSAVAGYCPNHGKWPENNTSAGVASPPSDIKGKYVKEVEVKNGVVTATMLSSGVNNEIKGKKLSLWARR
ENGSVKWFCGQPVTRTDDDTVADAKDGKEIDTKHLPSTCRDKASDAK

Nucleotide


Download         Length: 384 bp        

>NTDB_id=420211 GYN05_RS10575 WP_284445949.1 2025252..2025635(-) (pilE) [Neisseria gonorrhoeae strain CT532]
TTGCCCGCCGGAATATTAAAACACCGCCCAAAAAAATCAGCCGTTGCCGGGTATTGCCCGAATCACGGCAAATGGCCGGA
AAACAACACTTCTGCCGGCGTGGCATCCCCCCCCTCCGACATCAAAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACG
GCGTCGTTACCGCCACAATGCTTTCAAGCGGCGTAAACAATGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGT
GAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCACCGACGACGACACCGTTGCCGACGCCAAAGACGG
CAAAGAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAGGCATCTGATGCCAAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

89.516

97.638

0.874
  pilE Neisseria gonorrhoeae strain FA1090

68.293

96.85

0.661

Multiple sequence alignment