Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GYN06_RS10705 Genome accession   NZ_CP048246
Coordinates   2052982..2053398 (-) Length   138 a.a.
NCBI ID   WP_250333191.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT602     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2047982..2058398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN06_RS10680 (GYN06_10430) - 2048542..2049294 (-) 753 Protein_2071 opacity family porin -
  GYN06_RS10685 (GYN06_10435) - 2050454..2050798 (-) 345 Protein_2072 pilin -
  GYN06_RS10690 (GYN06_10440) - 2050764..2051216 (-) 453 Protein_2073 pilin -
  GYN06_RS10695 (GYN06_10445) lpxC 2051345..2052268 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  GYN06_RS10705 (GYN06_10450) pilE 2052982..2053398 (-) 417 WP_250333191.1 pilin Machinery gene
  GYN06_RS10710 (GYN06_10455) - 2053494..2053922 (-) 429 Protein_2076 pilin -
  GYN06_RS10715 (GYN06_10460) - 2054449..2054667 (-) 219 Protein_2077 pilin -
  GYN06_RS10720 - 2055030..2055161 (-) 132 WP_012504086.1 hypothetical protein -
  GYN06_RS10725 (GYN06_10465) - 2055243..2055932 (-) 690 WP_003687013.1 M48 family metallopeptidase -
  GYN06_RS10730 (GYN06_10470) - 2055929..2056672 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  GYN06_RS10735 (GYN06_10475) gmhB 2056702..2057265 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14803.57 Da        Isoelectric Point: 8.4837

>NTDB_id=420165 GYN06_RS10705 WP_250333191.1 2052982..2053398(-) (pilE) [Neisseria gonorrhoeae strain CT602]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGIWPENNGAAGVASASTIKGKYVQKVEVAKGVVTAQMASTGVNNEIK
GKKLSLWARRQDGSVKWFCGQPVTRANDAAKDAVTADAKDAIETKHLPSTCRDKHSDT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=420165 GYN06_RS10705 WP_250333191.1 2052982..2053398(-) (pilE) [Neisseria gonorrhoeae strain CT602]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATAACGGCATATGGCCGGAAAACAACGGCGCTGCCGGCGTGGCATCCGCTTCAACAATCAAAGGCA
AATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTCACCGCCCAAATGGCTTCAACCGGCGTAAACAATGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCAA
CGACGCCGCCAAAGACGCCGTTACCGCCGACGCCAAAGACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATA
AACACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75.54

100

0.761
  pilE Neisseria gonorrhoeae MS11

72.34

100

0.739

Multiple sequence alignment