Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GYN06_RS10590 Genome accession   NZ_CP048246
Coordinates   2029084..2029509 (-) Length   141 a.a.
NCBI ID   WP_123771587.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT602     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2024084..2034509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN06_RS10560 (GYN06_10320) thiC 2024172..2026073 (+) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  GYN06_RS10565 - 2026562..2026921 (-) 360 Protein_2048 pilin -
  GYN06_RS10570 - 2026961..2027323 (-) 363 Protein_2049 pilin -
  GYN06_RS10575 - 2027369..2027689 (-) 321 Protein_2050 pilin -
  GYN06_RS10580 - 2027750..2028154 (-) 405 Protein_2051 pilin -
  GYN06_RS10585 (GYN06_10335) - 2028681..2029031 (-) 351 Protein_2052 pilin -
  GYN06_RS10590 (GYN06_10340) pilE 2029084..2029509 (-) 426 WP_123771587.1 pilin Machinery gene
  GYN06_RS10595 (GYN06_10345) - 2029561..2029869 (+) 309 Protein_2054 NAD(P)-dependent oxidoreductase -
  GYN06_RS10600 (GYN06_10350) metG 2029944..2031998 (-) 2055 WP_050169372.1 methionine--tRNA ligase -
  GYN06_RS10605 (GYN06_10355) glmS 2032114..2033952 (-) 1839 WP_003691965.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15221.25 Da        Isoelectric Point: 9.3144

>NTDB_id=420163 GYN06_RS10590 WP_123771587.1 2029084..2029509(-) (pilE) [Neisseria gonorrhoeae strain CT602]
MASASTIKGKYVQKVEVAKGVVTAQMASTGVNNEIKGKKLSLWARREAGSVKWFCGQPVTRDKAVTDDAVKDVTGNDKIE
TKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEIDTKHLPSTCRDKSSAE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=420163 GYN06_RS10590 WP_123771587.1 2029084..2029509(-) (pilE) [Neisseria gonorrhoeae strain CT602]
GTGGCATCCGCTTCAACAATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTCACCGCCCAAATGGC
TTCAACCGGCGTAAACAATGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGACAAAGCCGTCACCGACGACGCCGTCAAAGACGTCACCGGCAACGACAAAATCGAA
ACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAACCT
GCCGCGATAAATCATCTGCCGAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

77.528

63.121

0.489
  pilE Neisseria gonorrhoeae MS11

72.289

58.865

0.426

Multiple sequence alignment