Detailed information NTG0042005

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: I02_RS22045
• Genome accession: NC_017651
• Coordinates: 4464957..4465982 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli str. 'clone D i2'
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4459957..4470982

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I02_RS22015 (i02_4473)	zapB	4460041..4460286 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
I02_RS22020 (i02_4474)	rraA	4460371..4460856 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
I02_RS22025 (i02_4475)	menA	4460949..4461875 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
I02_RS22030 (i02_4476)	hslU	4461942..4463273 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
I02_RS22035 (i02_4477)	hslV	4463283..4463813 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
I02_RS22040 (i02_4478)	ftsN	4463906..4464865 (-)	960	WP_000068846.1	cell division protein FtsN	-
I02_RS22045 (i02_4479)	cytR	4464957..4465982 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
I02_RS22050 (i02_4480)	priA	4466138..4468336 (-)	2199	WP_001305041.1	primosomal protein N'	Machinery gene
I02_RS22055	rpmE	4468539..4468751 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
I02_RS22060 (i02_4482)	yiiX	4468812..4469420 (-)	609	WP_000702296.1	YiiX family permuted papain-like enzyme	-
I02_RS22065 (i02_4483)	metJ	4469480..4469797 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=42005 I02_RS22045 WP_000644904.1 4464957..4465982(-) (cytR) [Escherichia coli str. 'clone D i2']
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=42005 I02_RS22045 WP_000644904.1 4464957..4465982(-) (cytR) [Escherichia coli str. 'clone D i2']
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACTCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCACAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACTATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTACCTACAGTTCATATAGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGTTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628