Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KPZ59_RS17625 Genome accession   NZ_CP048131
Coordinates   3694262..3695080 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain D46     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3689262..3700080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPZ59_RS17610 (KPZ59_03538) pilE 3689479..3689904 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  KPZ59_RS17615 (KPZ59_03539) pilY2 3689901..3690383 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  KPZ59_RS17620 (KPZ59_03540) pilY1 3690396..3694250 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  KPZ59_RS17625 (KPZ59_03541) pilX 3694262..3695080 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KPZ59_RS17630 (KPZ59_03542) pilW 3695077..3696078 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  KPZ59_RS17635 (KPZ59_03543) pilV 3696079..3696639 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  KPZ59_RS17640 (KPZ59_03544) fimU 3696633..3697106 (-) 474 WP_001214065.1 pilus assembly FimT family protein Machinery gene
  KPZ59_RS17645 (KPZ59_03545) ispH 3697276..3698226 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KPZ59_RS17650 (KPZ59_03546) gmk 3698349..3698978 (+) 630 WP_000015937.1 guanylate kinase -
  KPZ59_RS17655 (KPZ59_03547) rpoZ 3699051..3699329 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KPZ59_RS17660 - 3699368..3699498 (+) 131 Protein_3452 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=420013 KPZ59_RS17625 WP_000149374.1 3694262..3695080(-) (pilX) [Acinetobacter baumannii strain D46]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=420013 KPZ59_RS17625 WP_000149374.1 3694262..3695080(-) (pilX) [Acinetobacter baumannii strain D46]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment