Detailed information NTG0420016

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IBG29_RS21970
• Genome accession: NZ_CP061073
• Coordinates: 4726385..4727389 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PAD8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4721385..4732389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBG29_RS21940 (IBG29_12125)	fghA	4721477..4722328 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
IBG29_RS21945 (IBG29_12120)	ispF	4722399..4722872 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IBG29_RS21950 (IBG29_12115)	truD	4722869..4723936 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
IBG29_RS21955 (IBG29_12110)	surE	4723924..4724673 (+)	750	WP_004345454.1	5'/3'-nucleotidase SurE	-
IBG29_RS21960 (IBG29_12105)	-	4724706..4725341 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IBG29_RS21965 (IBG29_12100)	-	4725387..4726280 (+)	894	WP_034002369.1	peptidoglycan DD-metalloendopeptidase family protein	-
IBG29_RS21970 (IBG29_12095)	rpoS	4726385..4727389 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
IBG29_RS21975 (IBG29_12090)	fdxA	4727815..4728138 (-)	324	WP_003092272.1	ferredoxin FdxA	-
IBG29_RS21980 (IBG29_12085)	mutS	4728205..4730784 (-)	2580	WP_240609656.1	DNA mismatch repair protein MutS	-
IBG29_RS21985 (IBG29_12080)	-	4731152..4731517 (+)	366	WP_240609655.1	hypothetical protein	-
IBG29_RS21990 (IBG29_12075)	-	4731510..4732145 (+)	636	WP_201417429.1	DUF2335 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=420016 IBG29_RS21970 WP_003113871.1 4726385..4727389(+) (rpoS) [Pseudomonas aeruginosa strain PAD8]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=420016 IBG29_RS21970 WP_003113871.1 4726385..4727389(+) (rpoS) [Pseudomonas aeruginosa strain PAD8]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGATGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653