Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   M662_RS14770 Genome accession   NZ_CP048117
Coordinates   2805385..2806062 (-) Length   225 a.a.
NCBI ID   WP_008635534.1    Uniprot ID   -
Organism   Bacillus sp. SB49     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2800385..2811062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M662_RS14740 (M662_14715) - 2800872..2801366 (-) 495 WP_008635553.1 flagellar protein FlgN -
  M662_RS14745 (M662_14720) flgM 2801379..2801642 (-) 264 WP_008635552.1 flagellar biosynthesis anti-sigma factor FlgM -
  M662_RS14750 (M662_14725) - 2801720..2802145 (-) 426 WP_236096519.1 TIGR03826 family flagellar region protein -
  M662_RS14755 (M662_14730) - 2802216..2802749 (-) 534 WP_008635550.1 ComF family protein -
  M662_RS14760 (M662_14735) - 2802878..2803993 (-) 1116 WP_035388326.1 DNA/RNA helicase -
  M662_RS14765 (M662_14740) - 2804330..2805175 (-) 846 WP_026578199.1 DegV family protein -
  M662_RS14770 (M662_14745) degU 2805385..2806062 (-) 678 WP_008635534.1 response regulator transcription factor Regulator
  M662_RS14775 (M662_14750) degS 2806227..2807366 (-) 1140 WP_008635532.1 sensor histidine kinase Regulator
  M662_RS14780 (M662_14755) - 2807556..2808197 (+) 642 WP_026578198.1 YigZ family protein -
  M662_RS14785 (M662_14760) - 2808215..2809228 (+) 1014 WP_008635527.1 LCP family protein -
  M662_RS14790 (M662_14765) - 2809308..2810351 (-) 1044 WP_008635524.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25306.95 Da        Isoelectric Point: 5.3708

>NTDB_id=419969 M662_RS14770 WP_008635534.1 2805385..2806062(-) (degU) [Bacillus sp. SB49]
MTTRIVLIDDHKLFREGVKRILDFESSFEVVAEGDDGDTALQIIEEYMPDVVLMDINMPSMNGVEATAEITKRYPEMKVI
ILSIHDDENYVTHALKTGAQGYLLKEMDSDALIEAIKVVGAGGSYLHPKVTHNLVAEYRRLSETKGSSAYRTIEYRKPLH
LLTRRECEVLQLLADGNSNRGVAESLYISEKTVKNHVSNILQKMNVNDRTQAVVTAIKNGWVEVI

Nucleotide


Download         Length: 678 bp        

>NTDB_id=419969 M662_RS14770 WP_008635534.1 2805385..2806062(-) (degU) [Bacillus sp. SB49]
ATGACGACCAGAATAGTCCTAATCGACGATCACAAATTATTTCGGGAGGGCGTAAAAAGAATTTTGGATTTTGAATCCAG
TTTCGAAGTCGTGGCAGAAGGCGACGATGGAGATACAGCCCTTCAAATCATCGAAGAATACATGCCGGATGTTGTGTTAA
TGGATATCAACATGCCGAGCATGAACGGAGTCGAGGCGACTGCGGAGATTACAAAGCGTTATCCGGAAATGAAAGTGATC
ATTCTTTCTATCCATGACGACGAAAACTATGTGACTCATGCGTTGAAAACTGGTGCGCAGGGGTACTTGCTGAAAGAGAT
GGATTCAGACGCTTTGATTGAAGCAATCAAAGTTGTAGGGGCAGGCGGTTCTTACCTGCATCCGAAAGTGACTCATAATT
TAGTTGCGGAATATCGCCGCCTTTCTGAGACGAAAGGAAGCAGCGCATACCGTACAATCGAATACCGTAAGCCACTTCAT
CTCTTGACCCGTCGCGAGTGTGAAGTGCTTCAGCTTCTTGCCGATGGAAACAGTAACCGAGGTGTAGCAGAGTCTCTGTA
CATCAGTGAGAAAACCGTTAAAAACCATGTGAGTAATATCCTTCAGAAGATGAATGTAAATGACCGTACGCAGGCCGTTG
TTACAGCAATAAAGAATGGATGGGTAGAAGTTATTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(161-216)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

77.679

99.556

0.773
  vraR Staphylococcus aureus N315

37.668

99.111

0.373

Multiple sequence alignment