Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   M662_RS12095 Genome accession   NZ_CP048117
Coordinates   2297760..2298503 (-) Length   247 a.a.
NCBI ID   WP_008638260.1    Uniprot ID   A0A7Z2YAS6
Organism   Bacillus sp. SB49     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2292760..2303503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M662_RS12075 (M662_12055) - 2292960..2293775 (-) 816 WP_193743889.1 pyruvate, water dikinase regulatory protein -
  M662_RS12080 (M662_12060) - 2293798..2294427 (-) 630 WP_026577201.1 helix-turn-helix transcriptional regulator -
  M662_RS12085 (M662_12065) glyS 2294509..2296596 (-) 2088 WP_026577200.1 glycine--tRNA ligase subunit beta -
  M662_RS12090 (M662_12070) glyQ 2296589..2297476 (-) 888 WP_008638258.1 glycine--tRNA ligase subunit alpha -
  M662_RS12095 (M662_12075) recO 2297760..2298503 (-) 744 WP_008638260.1 DNA repair protein RecO Machinery gene
  M662_RS12100 (M662_12080) - 2298521..2298673 (-) 153 WP_008638267.1 YqzL family protein -
  M662_RS12105 (M662_12085) era 2298769..2299674 (-) 906 WP_008638268.1 GTPase Era -
  M662_RS12110 (M662_12090) - 2299747..2300127 (-) 381 WP_008638269.1 diacylglycerol kinase family protein -
  M662_RS12115 (M662_12095) ybeY 2300102..2300581 (-) 480 WP_026577199.1 rRNA maturation RNase YbeY -
  M662_RS12120 (M662_12100) - 2300578..2302698 (-) 2121 WP_008638271.1 HDIG domain-containing metalloprotein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28218.99 Da        Isoelectric Point: 9.2014

>NTDB_id=419960 M662_RS12095 WP_008638260.1 2297760..2298503(-) (recO) [Bacillus sp. SB49]
MLDKVEGLVIRTNDYGETHKVVTLMTREKGKIAVMARGAKKPKSRMSSVTQPFIHGMYLIHSGSGLGSMSQGEMLSSLRS
IREDIVKTAYASYIAELTDKLMEEKQPDPFLFEQLLQTLSWMNEGKDPNILSMMYELKMFKKAGFAPVVDQCIHCGSQEG
PFSFSIVEGGVLCFRCKGRDPEAYGLPEPLPKLLRVFLHMDVKRLGTITMKEENKKLLRQLMDDYYERYGGYFLKSKKFL
RQLDQFS

Nucleotide


Download         Length: 744 bp        

>NTDB_id=419960 M662_RS12095 WP_008638260.1 2297760..2298503(-) (recO) [Bacillus sp. SB49]
TTGTTAGACAAAGTGGAAGGCTTGGTCATCCGGACGAACGATTACGGGGAGACTCATAAGGTCGTAACCCTGATGACTAG
AGAAAAAGGTAAAATTGCTGTGATGGCGCGCGGGGCTAAAAAGCCGAAAAGCCGGATGTCATCGGTGACGCAGCCTTTCA
TCCATGGGATGTACCTCATTCATTCGGGGTCCGGATTAGGTTCTATGAGTCAGGGCGAAATGCTCTCTTCGCTGCGATCG
ATCCGCGAAGATATCGTTAAAACAGCGTACGCTTCTTATATTGCTGAATTGACGGACAAACTCATGGAAGAAAAACAGCC
GGATCCTTTTCTTTTTGAACAGCTCCTGCAGACACTGTCCTGGATGAACGAAGGCAAGGATCCGAACATCCTTTCGATGA
TGTACGAACTGAAGATGTTCAAGAAAGCGGGCTTTGCTCCGGTCGTGGATCAGTGTATTCACTGCGGCAGTCAGGAAGGA
CCGTTCTCTTTCTCCATCGTGGAAGGAGGCGTCTTGTGCTTTCGTTGTAAAGGGCGCGATCCGGAAGCCTATGGACTGCC
GGAACCGCTGCCGAAGCTGTTGCGTGTATTTCTACATATGGATGTCAAGCGTTTGGGTACCATCACGATGAAGGAAGAAA
ATAAGAAACTGCTCAGGCAGTTGATGGATGATTATTACGAACGATACGGCGGTTATTTTTTGAAATCAAAAAAGTTCCTC
AGACAGCTTGATCAGTTCTCCTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(4-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2YAS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

51.639

98.785

0.51

Multiple sequence alignment