Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IBG29_RS07915 Genome accession   NZ_CP061073
Coordinates   1707013..1708455 (-) Length   480 a.a.
NCBI ID   WP_009878058.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAD8     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1702013..1713455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBG29_RS07885 (IBG29_26165) - 1702339..1703454 (+) 1116 WP_003110035.1 glycosyltransferase family 1 protein -
  IBG29_RS07890 (IBG29_26160) - 1703447..1704208 (+) 762 WP_034004028.1 DUF2334 domain-containing protein -
  IBG29_RS07895 (IBG29_26155) - 1704205..1705206 (+) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  IBG29_RS07900 (IBG29_26150) - 1705181..1705393 (-) 213 WP_003101176.1 hypothetical protein -
  IBG29_RS07905 (IBG29_26145) purU 1705443..1706294 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  IBG29_RS07910 (IBG29_26140) mvaT 1706554..1706928 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  IBG29_RS07915 (IBG29_26135) sbcB 1707013..1708455 (-) 1443 WP_009878058.1 exodeoxyribonuclease I Machinery gene
  IBG29_RS07920 (IBG29_26130) - 1708680..1709417 (+) 738 WP_003101171.1 hypothetical protein -
  IBG29_RS07925 (IBG29_26125) - 1709455..1710252 (+) 798 WP_003120853.1 RDD family protein -
  IBG29_RS07930 (IBG29_26120) - 1710249..1711229 (+) 981 WP_003093893.1 stage II sporulation protein M -
  IBG29_RS07935 (IBG29_26115) - 1711216..1712787 (+) 1572 WP_034004035.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55535.80 Da        Isoelectric Point: 5.4194

>NTDB_id=419957 IBG29_RS07915 WP_009878058.1 1707013..1708455(-) (sbcB) [Pseudomonas aeruginosa strain PAD8]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVDERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=419957 IBG29_RS07915 WP_009878058.1 1707013..1708455(-) (sbcB) [Pseudomonas aeruginosa strain PAD8]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAACTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCCCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAAGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGTGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGACGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44

Multiple sequence alignment