Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   M662_RS10160 Genome accession   NZ_CP048117
Coordinates   1936945..1937535 (+) Length   196 a.a.
NCBI ID   WP_008638494.1    Uniprot ID   A0A7Z2SWR5
Organism   Bacillus sp. SB49     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1931945..1942535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M662_RS10140 (M662_10130) - 1932087..1932488 (-) 402 WP_026577375.1 cytidine deaminase -
  M662_RS10145 (M662_10135) - 1932665..1935733 (+) 3069 WP_026577374.1 efflux RND transporter permease subunit -
  M662_RS10150 (M662_10140) - 1935773..1936123 (-) 351 WP_008638489.1 YppE family protein -
  M662_RS10155 (M662_10145) - 1936179..1936445 (-) 267 WP_026577373.1 hypothetical protein -
  M662_RS10160 (M662_10150) recU 1936945..1937535 (+) 591 WP_008638494.1 Holliday junction resolvase RecU Machinery gene
  M662_RS10165 (M662_10155) - 1937552..1940206 (+) 2655 WP_026577372.1 PBP1A family penicillin-binding protein -
  M662_RS10170 (M662_10160) nth 1940220..1940894 (-) 675 WP_026577371.1 endonuclease III -
  M662_RS10175 (M662_10165) - 1940903..1941598 (-) 696 WP_026577370.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22567.79 Da        Isoelectric Point: 9.9498

>NTDB_id=419956 M662_RS10160 WP_008638494.1 1936945..1937535(+) (recU) [Bacillus sp. SB49]
MNYPNGKRAIKHSLAPKGKTKTDFSNRGMSLEEDINVTNEHYLASQKAVVHKKPTPVQIVNVDYPKRSAAVIKEAYFKQA
STTDFNGVYRGKYIDFEAKETKNKTSFPLSNVHQHQIDHMKAVQLHGGISFLIVKFTPLDEVYLLPAQDLFVYWDEQWQG
GRKSIPYSYIKQKGSLIPFRYQARVDYASVLDKLYF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=419956 M662_RS10160 WP_008638494.1 1936945..1937535(+) (recU) [Bacillus sp. SB49]
TTGAATTATCCCAACGGGAAGCGCGCTATAAAGCATTCGCTCGCCCCAAAAGGTAAGACGAAGACAGATTTCAGCAACCG
TGGGATGTCTTTGGAAGAGGATATTAATGTGACCAACGAGCACTACCTTGCGTCTCAGAAAGCCGTGGTCCATAAAAAAC
CGACACCGGTACAAATTGTAAATGTGGATTACCCGAAACGAAGCGCTGCCGTTATCAAAGAAGCATACTTTAAACAAGCT
TCGACGACAGACTTCAATGGAGTTTATCGCGGGAAATACATCGATTTTGAAGCGAAAGAGACGAAAAACAAAACGTCCTT
TCCCTTAAGTAACGTACACCAGCATCAGATCGATCATATGAAGGCGGTTCAACTTCACGGCGGCATCAGTTTTCTGATCG
TCAAATTCACCCCTTTGGATGAGGTCTACCTCCTCCCTGCTCAAGATTTATTCGTTTATTGGGACGAGCAGTGGCAAGGA
GGTCGCAAATCGATTCCCTACTCCTATATTAAACAAAAAGGAAGCTTGATTCCTTTCCGTTATCAGGCACGGGTCGACTA
TGCTTCTGTACTCGATAAGCTCTATTTTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(27-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2SWR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

57.286

100

0.582

Multiple sequence alignment