Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SPPN_RS04895 Genome accession   NC_015875
Coordinates   936725..938527 (+) Length   600 a.a.
NCBI ID   WP_000244148.1    Uniprot ID   A0AA36LBB9
Organism   Streptococcus pseudopneumoniae IS7493     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 931725..943527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS04875 (SPPN_04925) rnr 932021..934375 (+) 2355 WP_000654904.1 ribonuclease R -
  SPPN_RS04880 (SPPN_04930) smpB 934338..934805 (+) 468 WP_001051744.1 SsrA-binding protein SmpB -
  SPPN_RS04885 (SPPN_04935) tehB 934916..935641 (+) 726 WP_044012118.1 SAM-dependent methyltransferase TehB -
  SPPN_RS04890 (SPPN_04940) coiA 935753..936706 (+) 954 WP_000495917.1 competence protein CoiA Machinery gene
  SPPN_RS04895 (SPPN_04945) pepF 936725..938527 (+) 1803 WP_000244148.1 oligoendopeptidase F Regulator
  SPPN_RS04900 (SPPN_04950) - 938529..939242 (+) 714 WP_007285038.1 O-methyltransferase -
  SPPN_RS04905 (SPPN_04955) prsA 939309..940247 (+) 939 WP_000727951.1 peptidylprolyl isomerase PrsA -
  SPPN_RS12795 - 940554..940649 (+) 96 Protein_994 IS630 family transposase -
  SPPN_RS13905 - 940661..940819 (+) 159 WP_237701464.1 hypothetical protein -
  SPPN_RS04915 (SPPN_04960) - 941099..941719 (-) 621 WP_000780832.1 histidine phosphatase family protein -
  SPPN_RS04920 (SPPN_04965) - 941719..942201 (-) 483 WP_001085893.1 aminoacyl-tRNA deacylase -
  SPPN_RS04925 (SPPN_04970) - 942201..943043 (-) 843 WP_000954101.1 DUF368 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69911.74 Da        Isoelectric Point: 4.5210

>NTDB_id=41995 SPPN_RS04895 WP_000244148.1 936725..938527(+) (pepF) [Streptococcus pseudopneumoniae IS7493]
MVLQRNEINEKDTWDLSTIYPTDQAWEEALKDLTEQLETVAQYEGHLLDSADSLLEITEFSLEMERQMEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYDPEFMEISEKQYADFLESQPKLQVYQHYFDKLLQGKDHVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPYVLDDDGKEVQLSHGTYTRLMESKNREIRRGAYQALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPENVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVEYSFTYQEALR
KAEDALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=41995 SPPN_RS04895 WP_000244148.1 936725..938527(+) (pepF) [Streptococcus pseudopneumoniae IS7493]
ATGGTATTACAAAGAAACGAAATAAATGAAAAAGATACATGGGATCTATCAACGATCTACCCAACTGACCAGGCTTGGGA
AGAAGCCTTAAAAGATTTAACAGAACAGCTGGAGACAGTAGCCCAGTATGAAGGCCATCTCTTGGATAGTGCGGATAGCC
TACTCGAAATTACTGAATTTTCTCTTGAAATGGAACGCCAGATGGAGAAGCTTTACGTTTATGCTCATATGAAGAATGAT
CAGGATACACGTGAAGCTAAGTATCAAGAGTACTATGCCAAAGCAATGACACTCTATAGTCAGCTAGACCAAGCCTTTTC
ATTCTATGATCCTGAATTTATGGAAATTAGTGAAAAGCAGTATGCTGACTTTTTAGAGTCTCAACCAAAATTGCAGGTTT
ATCAACACTATTTTGACAAGCTTTTGCAAGGAAAGGATCATGTTCTTTCACAACGCGAAGAAGAATTATTAGCTGGAGCT
GGAGAAATCTTTGGTTCAGCAAGCGAAACCTTCGCTATTTTGGACAATGCGGATATTGTGTTCCCTTATGTCCTCGACGA
TGATGGTAAGGAAGTTCAGCTATCTCATGGGACCTACACACGTTTGATGGAGTCTAAAAATCGTGAGATTCGCCGTGGGG
CCTATCAAGCCCTTTATGCGACTTACGAACAATTCCAACACACCTATGCTAAAACCTTGCAAACCAATGTTAAGGTGCAA
AACTATCGTGCTAAAGTTCGCAACTACAAGAGCGCTCGTCATGCAGCCCTAGCGGCTAATTTTGTTCCAGAAAATGTTTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTACCTTGAACTTCGTTCAAAAATCTTGGGAA
TTTCAGATCTCAAGATGTACGATGTCTACACACCACTTTCATCTGTTGAATATAGTTTTACCTACCAAGAAGCCTTGAGA
AAAGCAGAAGATGCCTTGGCAGTCTTGGGTGAGGATTACTTGAGCCGTGTTAAACGTGCCTTCAGCGAGCGTTGGATTGA
TGTTTACGAAAACCAAGGAAAGCGTTCAGGTGCCTATTCTGGTGGTTCTTACGATACCAATGCCTTTATGCTTCTTAACT
GGCAGGACAATCTGGACAATCTCTTTACTCTTGTTCATGAAACAGGTCACAGTATGCATTCAAGCTATACTCGTGAAACG
CAACCTTATGTTTACGGAGATTATTCGATCTTCTTGGCTGAGATTGCCTCAACGACCAATGAAAATATCTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGACGATGCAACGCGCTTTGCTATTCTCAATAACTTCCTAGACGGTTTCCGTGGGACAGTTT
TCCGCCAAACTCAATTTGCTGAGTTTGAACACGCGATTCACCAAGCGGATCAAAATGGTGAAGTCTTGACAAGCGATTTC
TTAAATAAACTCTATGCTGACTTGAACCAAGAGTATTATGGTTTGAGTAAGGAAGACAATCCGGAAATCCAATACGAGTG
GGCTCGGATTCCACACTTCTACTATAACTACTATGTATACCAATATTCAACAGGCTTTGCGGCGGCCTCAGCCTTGGCTG
AAAAAATTGTCCATGGTAGTCAAGAAGACCGTGACCGCTATATCGACTACCTCAAGGCAGGTAAATCTGACTATCCACTT
AATGTCATGAGAAAAGCTGGCGTTGATATGGAGAAGGAAGACTATCTCAACGATGCCTTTGCAGTCTTTGAACGTCGTTT
GAATGAGTTTGAAGCCCTTGTTGAAAAATTGGGATTGGCGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

66.946

99.333

0.665

Multiple sequence alignment