Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HYC88_RS25425 Genome accession   NZ_CP061072
Coordinates   5920820..5922553 (-) Length   577 a.a.
NCBI ID   WP_073801526.1    Uniprot ID   -
Organism   Streptomyces sp. CB00271     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5915820..5927553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYC88_RS25415 (HYC88_25415) rpoS 5917787..5918878 (+) 1092 WP_073801524.1 RNA polymerase sigma factor Regulator
  HYC88_RS25420 (HYC88_25420) rcrQ 5918892..5920820 (-) 1929 WP_073801525.1 ABC transporter ATP-binding protein Regulator
  HYC88_RS25425 (HYC88_25425) rcrP 5920820..5922553 (-) 1734 WP_073801526.1 ABC transporter ATP-binding protein Regulator
  HYC88_RS25430 (HYC88_25430) - 5922756..5924207 (-) 1452 WP_073801527.1 FGGY family carbohydrate kinase -
  HYC88_RS25435 (HYC88_25435) - 5924451..5924756 (-) 306 WP_073801528.1 YtxH domain-containing protein -
  HYC88_RS25450 (HYC88_25450) - 5925465..5926589 (-) 1125 WP_073801529.1 PP2C family protein-serine/threonine phosphatase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62345.40 Da        Isoelectric Point: 5.3848

>NTDB_id=419917 HYC88_RS25425 WP_073801526.1 5920820..5922553(-) (rcrP) [Streptomyces sp. CB00271]
MLIKLLRAHLGPYKKPIVLLVLLQLLQTCATLYLPSLNADIIDNGVVSGDTGYILEFGGLMIAVSVVQVLCNVGAVYYGA
RTASALGRDVRAAVFDRVQSFSSRELGRFGAPSLITRTTNDVQQIQMLVLLAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGVSVGLIVKRMRPLFRTMQERLDGVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTDSSVVP
PVAPVTELRRHGHLEVRGAEFRYPGAEEPVLRAVELVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGEDVR
TLDPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRVVGTGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=419917 HYC88_RS25425 WP_073801526.1 5920820..5922553(-) (rcrP) [Streptomyces sp. CB00271]
GTGCTCATAAAACTCCTGCGGGCCCATCTGGGCCCGTACAAGAAACCCATCGTGCTGCTGGTGCTCCTCCAGCTGCTCCA
GACCTGCGCCACGCTGTATCTGCCCAGCCTGAACGCCGACATCATCGACAACGGTGTCGTCTCGGGCGACACCGGCTACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGTGTCGTTCAGGTGCTCTGCAATGTGGGTGCCGTGTACTACGGGGCC
CGGACCGCCTCCGCCCTCGGGCGCGATGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCTTCCCGTGAGCTGGG
GCGTTTCGGGGCGCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGATCCAGATGCTGGTGCTGCTGGCGTTCA
CCCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTCTCCGCGGTG
CTGCTGGCGGTCGTGCCGGTGCTCGGTGTCTCGGTCGGCCTCATCGTGAAGAGGATGCGGCCGCTGTTCCGCACCATGCA
GGAGCGGCTGGACGGGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGCGCGACG
GGTACGAGGAGAAGCGCTTCCGGGGTGCGAACACCGAGCTGACCGATGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTCAATCTGTCCTCGGTCGCGGTGGTGTGGTTCGGCGCGCACCGTATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGGGACCGATTCGAGTGTCGTGCCG
CCGGTCGCGCCCGTCACCGAGCTGCGCCGGCACGGGCATCTGGAGGTGCGGGGCGCGGAGTTCCGGTACCCGGGTGCGGA
GGAGCCGGTGCTGCGGGCCGTGGAGCTGGTGGCCCGGCCCGGGGAGACGACCGCGGTCATCGGGTCGACGGGCAGTGGGA
AGTCCACGCTGCTCGGGCTCGTACCCCGGCTGTTCGATGTGACGGACGGCGAGGTGCTGGTCGACGGCGAGGACGTGCGG
ACGCTGGATCCCGCGCTGCTGGCGAAGACGGTGTCGCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTGGCGAC
GAACCTGCGGTACGGGAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TCGAGGCGCTGGAACACGGGCTCGACGCGCCGATCGCGCAGGGCGGCACCAATGTGTCCGGCGGTCAGCGGCAGCGGCTC
GCCATCGCCCGGACGCTGGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCGTTCTCCGCGCTGGACTACGCGACCGA
CGCCGCGCTGCGGGCGGCGCTGGGGCGGGAGACCGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTGGGGACCGGCACCCATCACGAGCTGATGGACGGCAAT
GAAACATACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.623

100

0.4