Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   GSF71_RS01960 Genome accession   NZ_CP048116
Coordinates   406369..407646 (-) Length   425 a.a.
NCBI ID   WP_011374955.1    Uniprot ID   Q38W71
Organism   Latilactobacillus sakei strain MBEL1397     
Function   processing of ComS (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 400119..437611 406369..407646 within 0


Gene organization within MGE regions


Location: 400119..437611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS01950 - 400119..404459 (-) 4341 WP_085391478.1 PolC-type DNA polymerase III -
  GSF71_RS01955 - 404634..406343 (-) 1710 WP_085391479.1 proline--tRNA ligase -
  GSF71_RS01960 eeP 406369..407646 (-) 1278 WP_011374955.1 RIP metalloprotease RseP Regulator
  GSF71_RS01965 - 407853..408641 (-) 789 WP_162100828.1 phosphatidate cytidylyltransferase -
  GSF71_RS01970 - 408672..409427 (-) 756 WP_085391480.1 isoprenyl transferase -
  GSF71_RS01975 - 409595..412231 (+) 2637 WP_238389075.1 YhgE/Pip domain-containing protein -
  GSF71_RS01980 frr 412398..412955 (-) 558 WP_085391482.1 ribosome recycling factor -
  GSF71_RS01985 pyrH 412958..413683 (-) 726 WP_011374960.1 UMP kinase -
  GSF71_RS01990 tsf 413819..414694 (-) 876 WP_061827027.1 translation elongation factor Ts -
  GSF71_RS01995 rpsB 414801..415595 (-) 795 WP_011374962.1 30S ribosomal protein S2 -
  GSF71_RS02000 - 415763..416038 (-) 276 WP_016265351.1 GIY-YIG nuclease family protein -
  GSF71_RS02005 - 416031..416774 (-) 744 WP_162100829.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GSF71_RS02010 - 416896..417519 (+) 624 WP_061827026.1 lysophospholipid acyltransferase family protein -
  GSF71_RS02015 - 417581..418516 (-) 936 WP_011374966.1 alpha/beta hydrolase -
  GSF71_RS02020 - 418689..420479 (-) 1791 WP_025016407.1 ABC transporter ATP-binding protein -
  GSF71_RS02025 - 420481..422226 (-) 1746 WP_025016406.1 ABC transporter ATP-binding protein -
  GSF71_RS02030 - 422368..422598 (-) 231 WP_011374970.1 YneF family protein -
  GSF71_RS02035 - 422679..422921 (-) 243 WP_016265356.1 DUF896 domain-containing protein -
  GSF71_RS02040 lexA 423056..423670 (+) 615 WP_011374972.1 transcriptional repressor LexA -
  GSF71_RS02045 - 423805..424323 (-) 519 WP_011374973.1 adenine phosphoribosyltransferase -
  GSF71_RS02050 recJ 424347..426659 (-) 2313 WP_025016402.1 single-stranded-DNA-specific exonuclease RecJ -
  GSF71_RS02055 galE 426804..427796 (+) 993 WP_061827025.1 UDP-glucose 4-epimerase GalE -
  GSF71_RS02060 - 427882..428247 (+) 366 WP_011374976.1 DUF1304 domain-containing protein -
  GSF71_RS02065 - 428264..428590 (+) 327 WP_011374977.1 heavy metal-binding domain-containing protein -
  GSF71_RS02070 - 428641..430359 (-) 1719 WP_061827024.1 WxL domain-containing protein -
  GSF71_RS02075 - 430349..430744 (-) 396 WP_016265361.1 LPXTG cell wall anchor domain-containing protein -
  GSF71_RS02080 - 430734..431777 (-) 1044 WP_056947110.1 DUF916 and DUF3324 domain-containing protein -
  GSF71_RS02085 - 431898..432509 (-) 612 WP_025016396.1 WxL domain-containing protein -
  GSF71_RS02090 - 432656..433165 (-) 510 WP_025016395.1 DinB family protein -
  GSF71_RS02095 - 433312..433506 (+) 195 WP_016265364.1 hypothetical protein -
  GSF71_RS02100 lepA 433546..435384 (-) 1839 WP_011374985.1 translation elongation factor 4 -
  GSF71_RS09975 - 435519..435662 (-) 144 WP_011374986.1 hypothetical protein -
  GSF71_RS02105 - 435806..436117 (+) 312 WP_025016394.1 hypothetical protein -
  GSF71_RS02110 - 436222..436773 (+) 552 WP_025016393.1 hypothetical protein -
  GSF71_RS02115 - 436775..437611 (+) 837 WP_141265869.1 DNA/RNA non-specific endonuclease -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 46635.31 Da        Isoelectric Point: 9.6646

>NTDB_id=419909 GSF71_RS01960 WP_011374955.1 406369..407646(-) (eeP) [Latilactobacillus sakei strain MBEL1397]
MAAIIAFIIIFGILVVVHEFGHFYMAKRSGILVREFSVGMGPKLFATRKNGTTYTIRWLPLGGYVRMAGMADDESEIEAG
TQATLILDEQGRVQQINTSDKVTTLNGVPFQIAKTDLQKELWVEGYEGGDESEMKRYPVLHDATIIEADGTEVQIAPVDV
QFQSATLINRMLTNFAGPFNNFILAILAFILFAFLSGGVPQQSNQIGTVQENSAAQKAGLKANDRLLKVDNKKVASFTDF
SAIISEHPNETVAVRVQRGATEKTIKVTPKAVKVANQKEKVGQVGVTQKVKMNHSLKAKISYGFTQAWSIASQIFKILGS
FLTGGFSLDKLSGPVGMYSMTTQFTQQGFNALVYFLAFLSLNLGIMNLIPIPALDGGKLVLNIIEAIRRKPISPEKEGIV
TLIGVGIMVLLMVLVTWNDIQRFFF

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=419909 GSF71_RS01960 WP_011374955.1 406369..407646(-) (eeP) [Latilactobacillus sakei strain MBEL1397]
TTGGCTGCAATTATTGCGTTTATCATCATCTTTGGTATTTTAGTAGTCGTTCATGAATTTGGGCATTTTTACATGGCTAA
GCGCTCAGGCATTTTGGTGCGTGAGTTTTCTGTCGGCATGGGACCTAAATTATTTGCAACTCGCAAAAACGGCACAACTT
ACACCATCCGGTGGTTACCATTAGGTGGTTACGTTCGAATGGCGGGAATGGCCGACGATGAATCTGAAATTGAAGCGGGC
ACACAAGCGACTTTAATTTTGGACGAACAAGGACGCGTTCAACAGATTAATACAAGTGACAAGGTCACCACGTTAAACGG
GGTGCCTTTCCAAATTGCTAAAACAGATTTACAAAAGGAATTGTGGGTCGAAGGTTACGAAGGCGGCGACGAGTCAGAAA
TGAAACGTTATCCCGTCTTACATGATGCGACGATTATCGAAGCAGATGGAACGGAAGTGCAAATCGCACCCGTGGATGTC
CAATTCCAATCAGCAACGTTGATTAATCGGATGTTAACGAACTTTGCCGGACCATTTAATAACTTCATTCTCGCAATTCT
GGCCTTTATCCTCTTCGCTTTTCTAAGTGGGGGTGTGCCACAGCAATCCAATCAAATTGGCACGGTACAAGAGAATTCAG
CTGCTCAAAAGGCAGGCTTAAAAGCCAACGATCGTCTTTTGAAGGTTGATAACAAAAAAGTAGCGAGCTTCACTGACTTT
AGTGCGATAATTTCAGAACACCCTAACGAAACTGTTGCGGTGCGCGTTCAACGGGGCGCAACTGAAAAGACAATTAAGGT
GACTCCCAAGGCTGTCAAAGTGGCTAACCAAAAAGAAAAGGTTGGTCAAGTAGGGGTCACACAAAAAGTCAAAATGAATC
ATAGCCTAAAGGCCAAGATTTCTTACGGCTTTACACAAGCTTGGTCAATTGCCAGTCAGATTTTCAAGATCCTCGGGTCA
TTTTTAACCGGTGGGTTCTCACTAGATAAATTATCGGGGCCGGTCGGCATGTATTCAATGACGACCCAATTTACCCAACA
AGGCTTTAATGCGTTAGTTTATTTCTTAGCATTCTTATCACTTAATTTGGGGATTATGAATCTAATTCCGATTCCGGCGT
TAGATGGTGGTAAGTTAGTCTTGAACATTATTGAAGCGATTCGTCGCAAACCAATTTCACCTGAAAAAGAAGGCATCGTG
ACATTAATCGGTGTCGGTATTATGGTGTTATTAATGGTCTTAGTCACGTGGAATGATATACAACGATTTTTCTTTTAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-258)

Peptidase family M50 (Peptidase_M50)

(6-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38W71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

48.148

100

0.489
  eeP Streptococcus thermophilus LMG 18311

48.148

100

0.489

Multiple sequence alignment