Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GSF71_RS01005 Genome accession   NZ_CP048116
Coordinates   211992..214058 (-) Length   688 a.a.
NCBI ID   WP_226474266.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MBEL1397     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 206992..219058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS00980 - 207114..208061 (-) 948 WP_162100798.1 hypothetical protein -
  GSF71_RS00985 - 208150..209868 (-) 1719 WP_011374765.1 ribonuclease J -
  GSF71_RS00990 rpsO 210096..210365 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  GSF71_RS00995 rpsT 210644..210898 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  GSF71_RS01000 holA 210967..211995 (-) 1029 WP_061826985.1 DNA polymerase III subunit delta -
  GSF71_RS01005 comEC 211992..214058 (-) 2067 WP_226474266.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GSF71_RS01010 - 214256..214744 (-) 489 WP_011374770.1 ComE operon protein 2 -
  GSF71_RS01015 comEA 214802..215509 (-) 708 WP_238389074.1 helix-hairpin-helix domain-containing protein Machinery gene
  GSF71_RS01020 - 215583..216630 (-) 1048 Protein_203 SepM family pheromone-processing serine protease -
  GSF71_RS01025 coaD 216632..217129 (-) 498 WP_061826982.1 pantetheine-phosphate adenylyltransferase -
  GSF71_RS01030 rsmD 217142..217696 (-) 555 WP_011374774.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GSF71_RS01035 - 217701..217991 (-) 291 WP_011374775.1 YlbG family protein -
  GSF71_RS01040 - 218015..219034 (-) 1020 WP_162100799.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 688 a.a.        Molecular weight: 77620.70 Da        Isoelectric Point: 9.7835

>NTDB_id=419905 GSF71_RS01005 WP_226474266.1 211992..214058(-) (comEC) [Latilactobacillus sakei strain MBEL1397]
MTQPQQPVAQYFKVQPDAIQVAGDSVQLTAIGQQDGQTIKAYYRCQTFAEKRQWQQVRHPVLFYGAKDFERIQGATNQNE
FDYARFLAQQKRCFYQLTLAKETTFALRRPSSGLDWLHYWRQTCALYLRKLPTALRFHAQTLLLGLREAQVDHYQVVLGR
LGIIHLLSLSGLHVFYLVQVIRWCATYCRIPREWLNCMLFGLLPVYALLVGGTTSISRAIALILCRLLCEQLGIRQSRLD
SWSLVLLVNLFWQPYLLHSMGGILSYLMAFALIYIGEGSTFKVAYWLSLLSLPVCLRFNYRWHVLTIMMNALVTPIYLPV
VLGLVIVASVMLPVSNLVVNGCEWLLQLIYKGLGLVAQIPHAMITFGKIPLLPLLLIVTVSLLLIDGQAISNQWRKRLKR
TLASLYLASFLAIHFNPTGQVVMFDIGQGDSLLIQTPFNRHQLLIDTGGRLALPQAAWQRRAQVSRAEKVTVNYLYSQGV
DHIDAVALSHQDADHIGDLNQILKQIRVDRIICAAGLPQNRQFQRQIRPFLATVQIEPYLAGTAFKVGPQKFNVLAPTKP
GKGENSDSLVLQAQIGGASWLFTGDLEQEGERAIIERYPQLTVDYLKVGHHGSKTASDPTVIKKLHLKGALISAGRENRY
GHPHQETLTTLQAAKVPYWLTAQQGMLIWAYGPGQSEKLQTTIKDSEK

Nucleotide


Download         Length: 2067 bp        

>NTDB_id=419905 GSF71_RS01005 WP_226474266.1 211992..214058(-) (comEC) [Latilactobacillus sakei strain MBEL1397]
ATGACACAACCACAACAACCGGTAGCACAGTATTTTAAAGTGCAACCCGATGCGATTCAAGTCGCGGGCGACAGTGTTCA
ATTAACGGCAATCGGCCAACAAGATGGTCAGACTATTAAGGCTTATTATCGCTGCCAAACGTTCGCCGAGAAGAGGCAGT
GGCAACAAGTACGACACCCCGTTTTGTTCTATGGCGCAAAAGATTTTGAACGTATACAAGGAGCTACCAATCAAAATGAG
TTTGATTATGCCCGTTTTTTAGCGCAACAGAAGCGCTGCTTTTACCAACTGACGTTAGCCAAAGAAACAACTTTTGCGCT
GAGACGTCCTAGTAGCGGTTTGGATTGGCTACATTATTGGCGCCAAACGTGTGCGCTGTATTTACGTAAGTTACCAACAG
CACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTGCGGGAAGCGCAAGTTGACCATTACCAGGTTGTTTTGGGCCGC
TTAGGGATTATTCATCTATTAAGTCTATCAGGGTTGCACGTGTTTTATTTAGTGCAAGTCATTCGGTGGTGTGCGACTTA
TTGCCGTATACCGCGTGAGTGGTTAAACTGTATGTTATTTGGGCTATTGCCGGTATATGCCTTACTGGTTGGTGGTACGA
CAAGCATTAGTCGCGCGATTGCGCTTATTTTATGCCGGTTACTTTGCGAACAGTTGGGCATTCGGCAATCAAGATTAGAT
AGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCAGCCTTATTTGCTACATAGTATGGGCGGGATTTTAAGTTATTT
GATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCACGTTTAAAGTTGCTTACTGGCTAAGTTTATTGAGTTTGCCGG
TTTGCTTACGCTTTAATTATCGCTGGCACGTGCTGACGATAATGATGAATGCCTTAGTAACGCCTATCTATCTACCAGTT
GTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACCTGTTAGCAATCTAGTAGTTAACGGATGTGAGTGGCTGTTACA
GTTGATTTACAAAGGCTTAGGATTAGTCGCTCAAATCCCCCATGCGATGATTACGTTTGGTAAAATCCCCTTGTTACCAT
TACTATTGATTGTGACGGTCAGCCTCTTGTTAATCGATGGCCAGGCCATTAGCAATCAGTGGCGTAAACGGCTGAAACGC
ACATTGGCAAGTTTGTATTTGGCTAGTTTTTTGGCGATTCATTTTAATCCGACTGGCCAGGTAGTCATGTTTGATATTGG
TCAGGGTGATAGTTTGTTGATTCAAACGCCGTTTAACCGGCATCAGCTTTTAATCGATACTGGTGGCCGCCTAGCGCTAC
CGCAAGCAGCTTGGCAACGGCGGGCGCAGGTTTCACGAGCGGAAAAAGTAACGGTTAATTATCTCTATAGCCAAGGAGTA
GATCACATTGATGCGGTGGCACTTTCTCATCAGGATGCCGATCATATTGGTGATTTGAATCAGATTTTGAAACAAATTCG
TGTTGATCGAATCATTTGTGCTGCCGGGTTACCGCAAAATCGGCAATTTCAAAGACAAATTCGACCATTTTTAGCAACGG
TTCAAATTGAACCCTATTTAGCCGGGACCGCTTTTAAAGTGGGGCCGCAAAAGTTTAACGTCTTAGCGCCGACTAAGCCG
GGAAAAGGCGAAAATAGTGATTCGTTAGTCTTACAGGCACAAATTGGTGGGGCTAGCTGGCTGTTTACAGGGGATTTAGA
GCAAGAAGGCGAACGAGCGATTATCGAGCGGTATCCACAGTTAACCGTCGATTATTTAAAAGTTGGCCATCACGGTAGTA
AAACGGCTAGTGACCCCACCGTGATTAAAAAATTGCACTTAAAAGGCGCATTAATCTCAGCCGGCAGAGAGAATCGTTAT
GGTCATCCGCACCAGGAAACTTTGACGACTTTGCAAGCGGCCAAAGTGCCTTATTGGTTAACGGCGCAGCAGGGGATGTT
GATCTGGGCGTACGGTCCCGGTCAAAGCGAAAAACTGCAAACAACAATAAAGGATAGTGAAAAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(142-385)

Metallo-beta-lactamase superfamily (Lactamase_B)

(427-635)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

97.384

100

0.974

Multiple sequence alignment