Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   HYC88_RS20255 Genome accession   NZ_CP061072
Coordinates   4715402..4716823 (-) Length   473 a.a.
NCBI ID   WP_073806218.1    Uniprot ID   -
Organism   Streptomyces sp. CB00271     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4710402..4721823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYC88_RS20235 (HYC88_20235) - 4711165..4711836 (-) 672 WP_073806220.1 SigE family RNA polymerase sigma factor -
  HYC88_RS20240 (HYC88_20240) - 4712055..4712960 (-) 906 WP_047177250.1 A/G-specific adenine glycosylase -
  HYC88_RS20245 (HYC88_20245) - 4713264..4713998 (+) 735 WP_073806219.1 hypothetical protein -
  HYC88_RS20250 (HYC88_20250) disA 4714198..4715322 (-) 1125 WP_003968311.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  HYC88_RS20255 (HYC88_20255) radA/sms 4715402..4716823 (-) 1422 WP_073806218.1 DNA repair protein RadA Machinery gene
  HYC88_RS20260 (HYC88_20260) - 4716980..4718917 (+) 1938 WP_073806217.1 BACON domain-containing protein -
  HYC88_RS20265 (HYC88_20265) - 4718935..4719801 (-) 867 WP_073806216.1 hypothetical protein -
  HYC88_RS20270 (HYC88_20270) - 4719841..4720791 (+) 951 WP_073806215.1 Ppx/GppA phosphatase family protein -
  HYC88_RS20275 (HYC88_20275) - 4720883..4721728 (+) 846 WP_188115076.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 49947.10 Da        Isoelectric Point: 8.2591

>NTDB_id=419903 HYC88_RS20255 WP_073806218.1 4715402..4716823(-) (radA/sms) [Streptomyces sp. CB00271]
MAARTKSTKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LAHLDEVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVADMGDALRVLPRRSRQEAPQPRQEDNARR

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=419903 HYC88_RS20255 WP_073806218.1 4715402..4716823(-) (radA/sms) [Streptomyces sp. CB00271]
ATGGCTGCCCGTACGAAATCCACGAAGGACCGGCCGTCCTACCGCTGTACCGAATGCGGCTGGACCACCGCCAAGTGGCT
CGGCCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGCACCACCGCGGCGG
GCCGGGTCTCCACGGCCGCGCTGCCGATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGTCGACCGGCGTCGGTGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTGCCGGGCGCGGTCGTGCTGCTGGCGGGTGAGCCGGGTGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTATGTGACGGCCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGGGCCGACCGGATCCGGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACCGATCTGTCGGCGGTG
CTCGCGCATCTGGACGAGGTCAAGCCGTCGCTGCTCGTCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGGATGGCCCAGGTGCGGGAGGTCGCCGGGGCGCTGATCCGGGCGTCCAAGGAGCGCGGGATGGCCACGC
TGCTCGTCGGCCACGTCACGAAGGACGGCGCGATCGCCGGCCCCCGGCTGCTGGAGCACCTGGTGGACGTCGTGCTCTCC
TTCGAGGGGGACCGCCACGCCCGGCTGCGTCTGGTGCGCGGCGTCAAGAACCGCTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAACTGCACGACGAGGGCATCACCGGACTCGCCGACCCCTCGGGCCTCTTCCTGACCCGCCGCGACGTGGCGGTGC
CGGGCACCTGCCTGACGGTGACCCTGGAGGGCAAGCGGCCCCTGGTCGCCGAGGTGCAGGCGCTCACGGTCGACTCGCAG
ATCCCTTCGCCCCGGCGCACCACCTCCGGTCTGGAGACCTCACGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGCGTGAAGCTCACCGAGCCCGCCGCCGACC
TGGCCATCGCGCTCGCGCTGGCCAGCGCGGCCAGCGACACCCCGCTCCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGG
CTCGCGGGCGAGGTCAGGAGGGTTACCGGGGTGCAGCGGCGACTGGCCGAGGCACACCGGCTGGGCTTCACCCACGCGCT
CGTTCCGACGGACCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGCGACGCTCTGCGGGTCC
TCCCGCGCCGGTCTCGTCAAGAGGCGCCGCAGCCTCGTCAGGAAGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.027

95.56

0.421
  radA Streptococcus mitis SK321

44.159

90.486

0.4
  radA Streptococcus pneumoniae Rx1

44.159

90.486

0.4
  radA Streptococcus pneumoniae D39

44.159

90.486

0.4
  radA Streptococcus pneumoniae R6

44.159

90.486

0.4
  radA Streptococcus pneumoniae TIGR4

44.159

90.486

0.4
  radA Streptococcus mitis NCTC 12261

43.925

90.486

0.397

Multiple sequence alignment