Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GSF71_RS00620 Genome accession   NZ_CP048116
Coordinates   129841..130707 (-) Length   288 a.a.
NCBI ID   WP_016265144.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MBEL1397     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 124841..135707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS00605 topA 126077..128161 (-) 2085 WP_016265142.1 type I DNA topoisomerase -
  GSF71_RS00610 - 128411..128845 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  GSF71_RS00615 - 128874..129740 (-) 867 WP_016265143.1 NAD(P)H-binding protein -
  GSF71_RS00620 dprA 129841..130707 (-) 867 WP_016265144.1 DNA-processing protein DprA Machinery gene
  GSF71_RS00625 - 130762..131523 (-) 762 WP_016265145.1 ribonuclease HII -
  GSF71_RS00630 ylqF 131525..132373 (-) 849 WP_035144879.1 ribosome biogenesis GTPase YlqF -
  GSF71_RS00635 - 132793..133692 (-) 900 WP_016265147.1 hypothetical protein -
  GSF71_RS00640 - 133902..135107 (-) 1206 WP_226474316.1 ATP-binding protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31887.88 Da        Isoelectric Point: 8.5887

>NTDB_id=419903 GSF71_RS00620 WP_016265144.1 129841..130707(-) (dprA) [Latilactobacillus sakei strain MBEL1397]
MLTKNQLLLKVHLAAGFGPISELRLAAWLVTSHNWALSALEIAQIARLPERYWPTFQASFQSTTLQRQCIDHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALDTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=419903 GSF71_RS00620 WP_016265144.1 129841..130707(-) (dprA) [Latilactobacillus sakei strain MBEL1397]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGCTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGTAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCACAAATTGCGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCGAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGACCATGAAGTTCGAACGACTTATTTAACG
ATCTTAGATAAAGACTACCCACAACGCTTATTGGAAACCTATTTGCCACCTGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGGGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGTTTGTTACTATCTGAATACGCCCTCGATACACCAGCCCGGCGCTATCAATTTCCAGCCCGCAATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCCCGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.958

100

0.99
  dprA Legionella pneumophila strain ERS1305867

37.153

100

0.372

Multiple sequence alignment