Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IBL27_RS07575 Genome accession   NZ_CP061071
Coordinates   1549039..1549632 (+) Length   197 a.a.
NCBI ID   WP_002263052.1    Uniprot ID   Q8DVL3
Organism   Streptococcus mutans B04Sm5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1544039..1554632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS07545 (IBL27_07545) luxS 1544091..1544573 (+) 483 WP_002278778.1 S-ribosylhomocysteine lyase Regulator
  IBL27_RS07550 (IBL27_07550) - 1544734..1546374 (-) 1641 WP_002310992.1 cell division site-positioning protein MapZ family protein -
  IBL27_RS07555 (IBL27_07555) - 1546390..1547544 (-) 1155 WP_002308481.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  IBL27_RS07565 (IBL27_07565) gpsB 1547994..1548332 (-) 339 WP_002263050.1 cell division regulator GpsB -
  IBL27_RS07570 (IBL27_07570) - 1548438..1548959 (-) 522 WP_002263051.1 DUF1273 domain-containing protein -
  IBL27_RS07575 (IBL27_07575) recU 1549039..1549632 (+) 594 WP_002263052.1 Holliday junction resolvase RecU Machinery gene
  IBL27_RS07580 (IBL27_07580) pbp1a 1549733..1551628 (+) 1896 Protein_1471 penicillin-binding protein PBP1A -
  IBL27_RS07585 (IBL27_07585) pepC 1551972..1553306 (-) 1335 WP_002287668.1 aminopeptidase C -
  IBL27_RS07590 (IBL27_07590) nadE 1553419..1554243 (-) 825 WP_002283482.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22815.28 Da        Isoelectric Point: 10.1831

>NTDB_id=419828 IBL27_RS07575 WP_002263052.1 1549039..1549632(+) (recU) [Streptococcus mutans B04Sm5]
MVNYPHHFIRKQSKPSQISKTINFANRGMSFEAAINATNNYYLSQKIAVIHKKPTPIQIVRVDYPRRSRAKIVEAYFRQA
STTDYSGVYKGYYIDFEAKETRHKTSIPMKNFHAHQIKHMSQVLDQKGICFVLLHFSTLRETYLLPASHLIHFYRIDNGG
KSMPLDYIKKNGYQVNVSAFPQVPYLDIIDKNILGGD

Nucleotide


Download         Length: 594 bp        

>NTDB_id=419828 IBL27_RS07575 WP_002263052.1 1549039..1549632(+) (recU) [Streptococcus mutans B04Sm5]
ATGGTCAACTATCCTCATCATTTCATTCGTAAACAAAGCAAACCCAGTCAAATATCTAAAACAATCAATTTTGCCAATCG
CGGAATGTCCTTTGAAGCAGCTATAAATGCGACAAATAACTACTATTTATCACAAAAAATAGCTGTTATCCATAAAAAAC
CAACTCCTATTCAAATTGTAAGGGTTGATTATCCTAGACGAAGTCGTGCTAAAATTGTTGAGGCTTATTTTAGGCAGGCT
TCAACAACCGACTACTCAGGAGTCTATAAAGGATATTACATTGATTTTGAAGCAAAAGAGACCAGACATAAGACATCTAT
TCCCATGAAAAACTTTCATGCACATCAGATCAAACATATGTCACAAGTTTTAGACCAAAAAGGTATTTGCTTTGTCTTAC
TGCATTTTTCCACACTTAGGGAGACCTATCTGCTTCCAGCCTCCCATCTAATCCATTTTTATCGGATTGATAATGGCGGG
AAGTCCATGCCACTTGATTATATCAAAAAAAATGGTTATCAGGTGAATGTGTCAGCTTTTCCTCAGGTTCCTTACTTAGA
TATTATTGATAAAAACATTTTAGGCGGTGATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.254

100

0.503