Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   IBL27_RS07545 Genome accession   NZ_CP061071
Coordinates   1544091..1544573 (+) Length   160 a.a.
NCBI ID   WP_002278778.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539091..1549573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS07530 (IBL27_07530) rpoZ 1540916..1541233 (-) 318 WP_002266355.1 DNA-directed RNA polymerase subunit omega -
  IBL27_RS07535 (IBL27_07535) gmk 1541257..1541889 (-) 633 WP_002266356.1 guanylate kinase -
  IBL27_RS07540 (IBL27_07540) - 1542339..1543946 (-) 1608 WP_002263046.1 ribonuclease Y -
  IBL27_RS07545 (IBL27_07545) luxS 1544091..1544573 (+) 483 WP_002278778.1 S-ribosylhomocysteine lyase Regulator
  IBL27_RS07550 (IBL27_07550) - 1544734..1546374 (-) 1641 WP_002310992.1 cell division site-positioning protein MapZ family protein -
  IBL27_RS07555 (IBL27_07555) - 1546390..1547544 (-) 1155 WP_002308481.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  IBL27_RS07565 (IBL27_07565) gpsB 1547994..1548332 (-) 339 WP_002263050.1 cell division regulator GpsB -
  IBL27_RS07570 (IBL27_07570) - 1548438..1548959 (-) 522 WP_002263051.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18006.64 Da        Isoelectric Point: 6.1364

>NTDB_id=419827 IBL27_RS07545 WP_002278778.1 1544091..1544573(+) (luxS) [Streptococcus mutans B04Sm5]
MTKEVTVESFELDHTAVKAPYVRLISEEFGPKGDLITNFDIRLVQPNEDSIPTAGLHTIEHLLAKLIRQRIDGMIDCSPF
GCRTGFHLIMWGKHTTTQIATVIKASLEEITNTISWKDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDDPFERHLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=419827 IBL27_RS07545 WP_002278778.1 1544091..1544573(+) (luxS) [Streptococcus mutans B04Sm5]
ATGACAAAAGAAGTTACTGTTGAAAGCTTTGAACTTGACCACACTGCTGTAAAAGCCCCTTATGTCCGTCTTATTTCAGA
AGAGTTTGGACCTAAAGGCGATCTTATTACCAATTTTGATATTCGCTTAGTACAGCCTAATGAAGACTCTATTCCGACTG
CAGGCCTTCATACTATTGAACATTTACTGGCTAAGCTGATTCGTCAGCGTATTGACGGGATGATTGACTGTTCCCCTTTT
GGCTGTCGTACTGGTTTTCATCTCATCATGTGGGGTAAGCATACAACAACCCAAATAGCCACAGTCATCAAAGCAAGTTT
AGAAGAAATTACTAATACAATCTCATGGAAAGATGTCCCTGGAACAACTATTGAGTCCTGTGGGAATTACAAAGATCATA
GCCTTTTTTCAGCTAAAGAATGGGCAAAGCTGATTTTAAAACAAGGCATTTCAGATGATCCTTTTGAGCGTCATCTAGTG
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.597

93.125

0.369