Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   IBL27_RS04175 Genome accession   NZ_CP061071
Coordinates   823406..825193 (+) Length   595 a.a.
NCBI ID   WP_002309309.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 818406..830193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS04150 (IBL27_04150) - 818619..819260 (+) 642 WP_002265582.1 DUF4352 domain-containing protein -
  IBL27_RS04155 (IBL27_04155) eno 819655..820953 (+) 1299 WP_002263196.1 surface-displayed alpha-enolase -
  IBL27_RS04160 (IBL27_04160) - 821017..821314 (+) 298 Protein_788 TetR/AcrR family transcriptional regulator -
  IBL27_RS04165 (IBL27_04165) - 821393..822088 (+) 696 WP_002269348.1 YjjG family noncanonical pyrimidine nucleotidase -
  IBL27_RS04170 (IBL27_04170) - 822131..823288 (-) 1158 Protein_790 low temperature requirement protein A -
  IBL27_RS04175 (IBL27_04175) uvrC 823406..825193 (+) 1788 WP_002309309.1 excinuclease ABC subunit UvrC Machinery gene
  IBL27_RS04180 (IBL27_04180) - 825340..825942 (+) 603 WP_188318740.1 nitroreductase family protein -
  IBL27_RS04185 (IBL27_04185) pepV 825957..827363 (+) 1407 WP_002302905.1 dipeptidase PepV -
  IBL27_RS04190 (IBL27_04190) - 827436..828023 (+) 588 WP_002264094.1 uracil-DNA glycosylase family protein -
  IBL27_RS04195 (IBL27_04195) - 828151..828453 (-) 303 WP_002265575.1 ArsR/SmtB family transcription factor -
  IBL27_RS04200 (IBL27_04200) - 828544..828894 (+) 351 WP_002265574.1 nuclear transport factor 2 family protein -
  IBL27_RS04205 (IBL27_04205) - 828912..829715 (+) 804 WP_002309305.1 amidohydrolase family protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 68906.36 Da        Isoelectric Point: 9.5146

>NTDB_id=419786 IBL27_RS04175 WP_002309309.1 823406..825193(+) (uvrC) [Streptococcus mutans B04Sm5]
MNELIKHKLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNTKTELLVSEIEDFEYIVTGSNTEALLLEIN
LIQENKPKYNIRLKDDKSYPFIKITNEPYPRLLITRQVKKDGGLYFGPYPDSGAATEIKRLLDRLFPFKKCTNPANKVCF
YYHLGQCKAHTICQTDQTYWDSLKEDVKNFLNGRDDKIVNELRDKMTKASELMEFERAAEYRDLIEGIGLLRTKQRVMNQ
DMQDRDIFGYYVDKGWMCVQVFFIRQGKLIQRDVNMFPYYNESEEDFLTYVGQFYQDNRHFIPKEIFIPRDIDETLVKAV
VNTKIIKPQRGEKKQLVNLATKNARVSLQQKFDLLEKDIRKTHGAIENIGDLLNIPKPVRIEAFDNSNIQGTSPVAAMVV
FVDGKPSKKDYRKFKIKTVIGPDDYASMREVIYRRYSRVMRDGLTPPDLIIIDGGQGQVNIARDVIENKLGLDIPIAGLQ
KNDKHQTHELLFGDPLEVIPLPRNSEEFFLLQRIQDEVHRFAITFHRQLRGKNTFSSKLNGIAGLGPKRKQLLMKHFKNL
PNIQKASLDDIINCGIPKNVAENIQESLREKREKG

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=419786 IBL27_RS04175 WP_002309309.1 823406..825193(+) (uvrC) [Streptococcus mutans B04Sm5]
ATGAACGAACTGATTAAACATAAGCTGGAATTGCTGCCAGATAGTCCTGGCTGTTATATTCACAAGGATAAAAACGGCAC
CATTATCTATGTCGGTAAGGCCAAGAACTTAAAAAACCGTGTGCGCAGCTATTTTCACGGCAGCCATAATACCAAGACAG
AATTGTTGGTTTCGGAAATTGAGGATTTTGAATACATTGTTACTGGGTCAAATACAGAAGCTTTACTTCTTGAGATTAAT
CTCATTCAGGAAAATAAGCCCAAGTACAATATCAGACTCAAAGATGATAAGTCTTATCCTTTTATTAAAATTACCAATGA
ACCTTATCCGCGTTTATTGATTACCCGTCAGGTGAAAAAGGATGGCGGTCTTTATTTTGGTCCCTACCCTGATTCGGGAG
CTGCTACTGAAATTAAGCGACTTTTAGATCGTCTCTTTCCCTTTAAAAAATGCACCAACCCAGCCAACAAGGTCTGTTTT
TATTATCATCTCGGGCAATGCAAGGCGCATACCATTTGTCAGACCGACCAAACCTATTGGGATAGTCTTAAAGAAGATGT
GAAAAACTTTCTCAATGGCAGGGACGATAAGATTGTCAATGAACTGCGCGATAAAATGACCAAAGCTTCTGAGCTCATGG
AATTTGAACGTGCAGCTGAATACCGAGATCTTATTGAGGGCATTGGTCTGTTGCGAACCAAGCAGCGCGTCATGAATCAG
GATATGCAGGATCGTGATATTTTTGGTTATTATGTTGATAAAGGCTGGATGTGTGTGCAGGTTTTCTTTATTCGTCAGGG
AAAGCTTATTCAGCGCGATGTCAATATGTTTCCTTATTACAATGAGTCTGAGGAAGATTTTCTGACCTATGTAGGACAGT
TCTATCAGGATAACCGTCACTTTATTCCAAAGGAGATTTTTATTCCTAGAGATATTGATGAAACTTTGGTTAAAGCGGTG
GTCAATACTAAGATTATCAAACCGCAGCGCGGCGAGAAGAAGCAGTTAGTCAATCTGGCAACGAAAAATGCTCGTGTTAG
CCTGCAGCAGAAATTTGATCTCTTGGAAAAAGATATTCGAAAAACGCATGGTGCGATTGAAAATATTGGAGATTTACTTA
ATATTCCTAAGCCAGTGCGCATTGAAGCCTTTGATAATTCCAACATTCAAGGAACCAGTCCTGTTGCAGCTATGGTTGTT
TTTGTGGACGGCAAGCCAAGTAAGAAGGATTATCGTAAATTTAAAATCAAAACCGTTATCGGACCTGATGACTATGCCAG
CATGCGTGAGGTTATTTATCGCAGATATAGCCGTGTCATGCGAGATGGACTGACACCACCAGACCTGATTATTATTGATG
GGGGACAAGGTCAGGTTAATATAGCGCGTGACGTTATCGAAAATAAATTGGGACTCGATATTCCTATCGCTGGTTTGCAA
AAAAATGATAAGCACCAAACCCATGAGCTGCTCTTTGGTGATCCGCTGGAAGTGATTCCTCTGCCTAGAAATTCAGAAGA
GTTCTTTCTCTTGCAGCGCATTCAAGACGAAGTGCATCGCTTTGCCATTACATTTCATAGGCAGCTGCGCGGTAAAAACA
CCTTCTCATCAAAGCTGAACGGTATTGCAGGGCTCGGCCCTAAGCGCAAGCAATTGCTGATGAAACACTTTAAGAACCTT
CCTAATATTCAAAAGGCCAGCCTAGATGATATTATCAACTGCGGCATTCCAAAAAATGTCGCAGAGAACATTCAGGAGAG
CTTGCGAGAGAAAAGAGAAAAAGGTTAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrB/uvrC motif (UVR)

(196-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

77.066

99.664

0.768
  uvrC Streptococcus pneumoniae R6

76.728

99.664

0.765
  uvrC Streptococcus pneumoniae D39

76.728

99.664

0.765