Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GSF17_RS29075 Genome accession   NZ_CP048051
Coordinates   6426416..6426823 (-) Length   135 a.a.
NCBI ID   WP_007929962.1    Uniprot ID   A0AAJ0ZLS6
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain zm-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6421416..6431823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF17_RS29060 - 6423295..6425358 (-) 2064 WP_162096248.1 methyl-accepting chemotaxis protein -
  GSF17_RS29065 - 6425456..6425995 (-) 540 WP_038575084.1 chemotaxis protein CheW -
  GSF17_RS29070 pilH 6426007..6426372 (-) 366 WP_007953328.1 twitching motility response regulator PilH -
  GSF17_RS29075 pilG 6426416..6426823 (-) 408 WP_007929962.1 twitching motility response regulator PilG Regulator
  GSF17_RS29080 gshB 6427061..6428035 (+) 975 WP_162096249.1 glutathione synthase -
  GSF17_RS29085 - 6428186..6429085 (+) 900 WP_124300696.1 energy transducer TonB -
  GSF17_RS29090 - 6429310..6429879 (+) 570 WP_007929972.1 YqgE/AlgH family protein -
  GSF17_RS29095 ruvX 6429879..6430316 (+) 438 WP_009046019.1 Holliday junction resolvase RuvX -
  GSF17_RS29100 pyrR 6430438..6430944 (+) 507 WP_007929976.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14681.06 Da        Isoelectric Point: 7.2445

>NTDB_id=419710 GSF17_RS29075 WP_007929962.1 6426416..6426823(-) (pilG) [Pseudomonas chlororaphis subsp. aurantiaca strain zm-1]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFEALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=419710 GSF17_RS29075 WP_007929962.1 6426416..6426823(-) (pilG) [Pseudomonas chlororaphis subsp. aurantiaca strain zm-1]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCCGAAACGCTGCT
GAAGAATGTGGGCTGTGAAGTCATCACCGCGGTCGACGGTTTCGAGGCCCTGGCCAAGATCGCCGACAACCACCCGGGCA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCACTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385

Multiple sequence alignment