Detailed information NTG0419706

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: GSF17_RS26665
• Genome accession: NZ_CP048051
• Coordinates: 5916999..5918327 (+)
• Length: 442 a.a.
• NCBI ID: WP_162096135.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain zm-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5911999..5923327

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSF17_RS26645	pgeF	5913487..5914212 (-)	726	WP_162096133.1	peptidoglycan editing factor PgeF	-
GSF17_RS26650	rluD	5914209..5915171 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
GSF17_RS26655	-	5915324..5916346 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
GSF17_RS26660	-	5916481..5916714 (+)	234	WP_162096134.1	PP0621 family protein	-
GSF17_RS26665	pilR	5916999..5918327 (+)	1329	WP_162096135.1	sigma-54-dependent transcriptional regulator	Regulator
GSF17_RS26670	thiO	5918324..5919424 (-)	1101	WP_162096136.1	glycine oxidase ThiO	-
GSF17_RS26675	-	5919479..5919880 (-)	402	WP_038575642.1	type IV pilin protein	-
GSF17_RS26680	-	5919894..5922965 (-)	3072	WP_162096137.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48687.95 Da
• Isoelectric Point: 8.0443

>NTDB_id=419706 GSF17_RS26665 WP_162096135.1 5916999..5918327(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain zm-1]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVALARLRELLNGALPGSTPANPATGPLLGDSTAMHKLRVQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVNAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=419706 GSF17_RS26665 WP_162096135.1 5916999..5918327(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain zm-1]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGCAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGTACGGGTCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAACTGTTGAATGGCGCCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCGATTCGACCGCCATGCACAAACTGCGCGTGCAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCGATCCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGAGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAAGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAGGTGAATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGTC
TGAACGTAATCGAGTTGGCGGTGCCACCGCTAAGGGCACGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGTGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.043	100	0.672
pilR	Acinetobacter baumannii strain A118	44.444	100	0.462