Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GSF17_RS08690 Genome accession   NZ_CP048051
Coordinates   1934886..1935521 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain zm-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1929886..1940521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF17_RS08670 - 1930131..1931063 (+) 933 WP_053268526.1 ABC transporter ATP-binding protein -
  GSF17_RS08675 - 1931060..1931839 (+) 780 WP_007931651.1 ABC transporter permease -
  GSF17_RS08680 - 1931888..1932403 (-) 516 WP_038580916.1 DUF2062 domain-containing protein -
  GSF17_RS08685 comA 1932552..1934783 (+) 2232 WP_162094667.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GSF17_RS08690 exbB 1934886..1935521 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GSF17_RS08695 - 1935518..1935946 (+) 429 WP_009047818.1 ExbD/TolR family protein -
  GSF17_RS08700 lpxK 1935946..1936956 (+) 1011 WP_124336242.1 tetraacyldisaccharide 4'-kinase -
  GSF17_RS08705 - 1936980..1937165 (+) 186 WP_007931663.1 Trm112 family protein -
  GSF17_RS08710 kdsB 1937162..1937926 (+) 765 WP_016702178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GSF17_RS08715 - 1937926..1938390 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  GSF17_RS08720 murB 1938387..1939406 (+) 1020 WP_162094668.1 UDP-N-acetylmuramate dehydrogenase -
  GSF17_RS08725 - 1939655..1940125 (+) 471 WP_038580901.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=419696 GSF17_RS08690 WP_007931657.1 1934886..1935521(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain zm-1]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=419696 GSF17_RS08690 WP_007931657.1 1934886..1935521(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain zm-1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAAATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCTGCCATGGCGCCGCTGCTAGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACTACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTCGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment