Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   GSF17_RS08685 Genome accession   NZ_CP048051
Coordinates   1932552..1934783 (+) Length   743 a.a.
NCBI ID   WP_162094667.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain zm-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1927552..1939783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF17_RS08660 - 1928673..1929332 (+) 660 WP_038580923.1 transglutaminase-like domain-containing protein -
  GSF17_RS08665 - 1929375..1929998 (+) 624 WP_124307981.1 glutathione S-transferase family protein -
  GSF17_RS08670 - 1930131..1931063 (+) 933 WP_053268526.1 ABC transporter ATP-binding protein -
  GSF17_RS08675 - 1931060..1931839 (+) 780 WP_007931651.1 ABC transporter permease -
  GSF17_RS08680 - 1931888..1932403 (-) 516 WP_038580916.1 DUF2062 domain-containing protein -
  GSF17_RS08685 comA 1932552..1934783 (+) 2232 WP_162094667.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GSF17_RS08690 exbB 1934886..1935521 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GSF17_RS08695 - 1935518..1935946 (+) 429 WP_009047818.1 ExbD/TolR family protein -
  GSF17_RS08700 lpxK 1935946..1936956 (+) 1011 WP_124336242.1 tetraacyldisaccharide 4'-kinase -
  GSF17_RS08705 - 1936980..1937165 (+) 186 WP_007931663.1 Trm112 family protein -
  GSF17_RS08710 kdsB 1937162..1937926 (+) 765 WP_016702178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GSF17_RS08715 - 1937926..1938390 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  GSF17_RS08720 murB 1938387..1939406 (+) 1020 WP_162094668.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81243.40 Da        Isoelectric Point: 10.0460

>NTDB_id=419695 GSF17_RS08685 WP_162094667.1 1932552..1934783(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain zm-1]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYALALFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPLHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGGWRARIRQRLLQVDAQGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYVL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNTVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLTVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=419695 GSF17_RS08685 WP_162094667.1 1932552..1934783(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain zm-1]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTGTTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATGCATTGGCACTTTTTCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGATGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGATTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAGCTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCTTGGCCTGGTATGGCGGGCCGCCGCTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGTCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGTTGCCGCGGAGGGCGGCTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAGGTCGA
TGCCCAGGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGCGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGTCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCGTTCGCCTC
GGCCCTGGGGTACGGATTGCTGGCGGGTTTCGACGTGCCGGTGCGTCGCGCCTGCGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCATTTCTGCTGGCGTTGAATACGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGACGGTGCCCTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGCGGTTTGCTGGACTTGCTGTT
CCGCGGTCTGACGCTATTGGCTGCCCAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGAGCCTTTCTGCTGTTGCTGCCCGCTGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTTCCGCCGAAAAACACTCTGCCATACGGCGAGGCGGAAGTTTGGCAACTGGATGTCGGGCAGGGGCTGGCGGTACTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGCCCGCGTTTGGGCGACTCCGACCTGGGCGCGCGGGTGGTACTGC
CATCATTGCGCAAGCTGGGCATTGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCTGGTGGCGCG
GACGCCGTCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAATGGCAATGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGACGCCCTGGCGGAG
CGCGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCACACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTGGCGCCTTCGGCAGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTGCGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.839

96.77

0.618

Multiple sequence alignment