Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   IBC03_RS09815 Genome accession   NZ_CP061025
Coordinates   1882051..1883151 (+) Length   366 a.a.
NCBI ID   WP_002947786.1    Uniprot ID   Q5LXI7
Organism   Streptococcus thermophilus strain 13496     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1877051..1888151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC03_RS09790 (IBC03_09815) pgsA 1877594..1878136 (-) 543 WP_002947777.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IBC03_RS09795 (IBC03_09820) - 1878149..1879006 (-) 858 WP_014608803.1 helix-turn-helix domain-containing protein -
  IBC03_RS09800 (IBC03_09825) - 1879065..1880342 (-) 1278 WP_011226704.1 pitrilysin family protein -
  IBC03_RS09805 (IBC03_09830) - 1880344..1881594 (-) 1251 WP_138496482.1 pitrilysin family protein -
  IBC03_RS09810 (IBC03_09835) yaaA 1881672..1882048 (+) 377 Protein_1881 S4 domain-containing protein YaaA -
  IBC03_RS09815 (IBC03_09840) recF 1882051..1883151 (+) 1101 WP_002947786.1 DNA replication/repair protein RecF Machinery gene
  IBC03_RS09820 (IBC03_09845) guaB 1883320..1884801 (-) 1482 WP_014608806.1 IMP dehydrogenase -
  IBC03_RS09825 (IBC03_09850) trpS 1884978..1886000 (-) 1023 WP_002952292.1 tryptophan--tRNA ligase -
  IBC03_RS09830 (IBC03_09855) - 1886428..1887300 (+) 873 WP_011227628.1 YitT family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42173.29 Da        Isoelectric Point: 8.3913

>NTDB_id=419626 IBC03_RS09815 WP_002947786.1 1882051..1883151(+) (recF) [Streptococcus thermophilus strain 13496]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=419626 IBC03_RS09815 WP_002947786.1 1882051..1883151(+) (recF) [Streptococcus thermophilus strain 13496]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5LXI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.642

97.814

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

42.935

100

0.432