Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GWK36_RS13080 Genome accession   NZ_CP048029
Coordinates   2673472..2673882 (+) Length   136 a.a.
NCBI ID   WP_166271734.1    Uniprot ID   A0A6G7VG40
Organism   Caldichromatium japonicum strain No.7     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2668472..2678882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK36_RS13050 (GWK36_13030) pyrR 2668561..2669139 (-) 579 WP_246237571.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  GWK36_RS13055 (GWK36_13035) ruvX 2669126..2669533 (-) 408 WP_166271726.1 Holliday junction resolvase RuvX -
  GWK36_RS13060 (GWK36_13040) - 2669541..2670104 (-) 564 WP_166271728.1 YqgE/AlgH family protein -
  GWK36_RS13065 (GWK36_13045) - 2670210..2671130 (-) 921 WP_166271730.1 energy transducer TonB -
  GWK36_RS13070 (GWK36_13050) - 2671135..2672214 (-) 1080 WP_166271732.1 FAD:protein FMN transferase -
  GWK36_RS13075 (GWK36_13055) gshB 2672276..2673247 (-) 972 WP_166272731.1 glutathione synthase -
  GWK36_RS13080 (GWK36_13060) pilG 2673472..2673882 (+) 411 WP_166271734.1 response regulator Regulator
  GWK36_RS13085 (GWK36_13065) - 2673979..2674431 (+) 453 WP_166271736.1 response regulator -
  GWK36_RS13090 (GWK36_13070) - 2674424..2675026 (+) 603 WP_166271738.1 chemotaxis protein CheW -
  GWK36_RS13095 (GWK36_13075) - 2675119..2677158 (+) 2040 WP_166271741.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14961.30 Da        Isoelectric Point: 5.8921

>NTDB_id=419588 GWK36_RS13080 WP_166271734.1 2673472..2673882(+) (pilG) [Caldichromatium japonicum strain No.7]
MPDELDLRGTKVLVVDDSKTIRRSAEMLLTKAGCEVQLAEDGFEALGKVVNFKPDLVFIDIMMPRLDGYHTCALIKNNPQ
FKNTPVVMLSSKDGVFDRAKGRLVGAQLYLSKPFTAEELLGAIRTSLNSSQTTDPS

Nucleotide


Download         Length: 411 bp        

>NTDB_id=419588 GWK36_RS13080 WP_166271734.1 2673472..2673882(+) (pilG) [Caldichromatium japonicum strain No.7]
ATGCCAGATGAATTAGACCTGCGCGGTACCAAGGTCCTGGTCGTCGATGACAGCAAAACCATCCGCCGCAGTGCCGAGAT
GCTACTCACCAAGGCCGGTTGCGAGGTCCAACTGGCCGAGGATGGCTTCGAGGCGCTGGGCAAGGTCGTCAATTTCAAGC
CCGACCTGGTCTTCATCGACATCATGATGCCACGGCTCGATGGTTATCACACCTGCGCCTTGATCAAAAACAACCCGCAG
TTCAAGAATACCCCGGTGGTGATGCTATCGAGCAAGGATGGGGTCTTCGATCGTGCCAAGGGGCGACTCGTCGGCGCCCA
GCTCTATCTCTCCAAGCCCTTCACCGCTGAAGAGCTGCTGGGGGCCATCCGGACGAGCCTCAATTCCTCCCAGACGACAG
ACCCGTCATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7VG40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

63.415

90.441

0.574
  pilH Synechocystis sp. PCC 6803

47.458

86.765

0.412

Multiple sequence alignment