Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   GWD03_RS06395 Genome accession   NZ_CP048022
Coordinates   1377655..1378932 (-) Length   425 a.a.
NCBI ID   WP_162045029.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain CACC 558     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1372655..1383932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWD03_RS06390 (GWD03_06485) - 1375906..1377615 (-) 1710 WP_003640732.1 proline--tRNA ligase -
  GWD03_RS06395 (GWD03_06490) eeP 1377655..1378932 (-) 1278 WP_162045029.1 RIP metalloprotease RseP Regulator
  GWD03_RS06400 (GWD03_06495) - 1378970..1379755 (-) 786 WP_003640734.1 phosphatidate cytidylyltransferase -
  GWD03_RS06405 (GWD03_06500) - 1379771..1380550 (-) 780 WP_046039550.1 isoprenyl transferase -
  GWD03_RS06410 (GWD03_06505) frr 1380670..1381233 (-) 564 WP_160230929.1 ribosome recycling factor -
  GWD03_RS06415 (GWD03_06510) pyrH 1381235..1381957 (-) 723 WP_003640737.1 UMP kinase -
  GWD03_RS06420 (GWD03_06515) tsf 1382157..1383035 (-) 879 WP_003644498.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 45840.35 Da        Isoelectric Point: 9.7123

>NTDB_id=419532 GWD03_RS06395 WP_162045029.1 1377655..1378932(-) (eeP) [Lactiplantibacillus plantarum strain CACC 558]
MIVTIITFIIVFGILVIVHEFGHFYFAKKAGILVREFSVGMGPKAVAFRRNATTYTLRFLPIGGYVRMAGVADDEDEELK
PGTPVSLQIGPDGIVHSINASKKTTLFNGIPLSVTATDLEKELWIEGYENGDESEVKHYAVNHDATIVESDGTEVQIAPV
DVQFQSAKLWQRMLTNFAGPMNNFILAIITFAILAFMQGGVTSTTTHVAATTADSVARTAGIQKGDQIVAVNGKKMTSAQ
SISLLIQDSPKQRLTLTINRAGQTKKIAVTPAAKTVSGNRIGQIGVQWATKTDTSLGAKLAYGFTGSWGITKQIFQVLGR
MVTHGFSLNDLGGPVAIFATTSQAAKSGVRTVIYLLAVLSINLGIVNLLPIPALDGGKLLLNIVEGIRGKPLRVETESVI
TLIGFGLLMLLMILVTWNDIQRYFF

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=419532 GWD03_RS06395 WP_162045029.1 1377655..1378932(-) (eeP) [Lactiplantibacillus plantarum strain CACC 558]
TTGATCGTTACAATTATTACGTTCATTATCGTTTTCGGAATCTTGGTCATCGTCCATGAATTTGGGCACTTTTACTTTGC
CAAAAAGGCTGGGATTCTAGTGCGTGAATTTTCTGTCGGGATGGGGCCCAAGGCGGTCGCGTTTCGTCGTAATGCAACAA
CTTATACGTTACGGTTTCTGCCAATCGGTGGTTACGTACGGATGGCCGGTGTGGCCGATGATGAAGATGAAGAACTCAAG
CCCGGAACGCCAGTTAGTTTGCAAATTGGTCCGGATGGGATTGTTCATTCAATCAATGCTAGTAAGAAGACAACGTTGTT
CAATGGAATTCCACTGTCAGTGACGGCGACTGATCTCGAAAAAGAACTCTGGATCGAAGGTTATGAGAACGGGGACGAAA
GTGAAGTTAAACACTACGCCGTCAATCATGACGCTACGATCGTTGAAAGCGATGGTACCGAAGTTCAAATTGCACCGGTC
GACGTCCAATTTCAATCGGCCAAGTTATGGCAACGAATGTTGACGAATTTTGCCGGACCGATGAATAACTTCATTTTGGC
CATCATTACATTTGCAATTCTTGCCTTTATGCAGGGTGGTGTTACGAGTACAACGACCCACGTAGCGGCGACGACAGCAG
ACTCAGTTGCCCGTACGGCCGGTATTCAAAAGGGCGATCAAATCGTGGCGGTTAACGGTAAAAAAATGACGAGTGCCCAA
TCGATTTCGCTGTTGATTCAAGACAGCCCGAAGCAACGGTTGACTTTGACCATCAACCGGGCCGGTCAGACTAAAAAAAT
TGCGGTTACCCCTGCTGCCAAGACGGTCTCTGGTAATCGAATCGGTCAAATCGGGGTCCAATGGGCGACTAAGACCGACA
CGAGTCTGGGGGCCAAGTTAGCATACGGCTTTACTGGTTCGTGGGGAATTACCAAACAGATTTTTCAAGTGCTTGGTCGG
ATGGTCACTCACGGGTTCAGTTTGAATGATTTAGGTGGGCCGGTGGCAATCTTTGCCACGACCTCGCAAGCCGCTAAGTC
CGGGGTACGCACGGTGATTTATTTGCTCGCCGTGCTGTCGATCAACCTTGGAATTGTTAATTTATTACCGATTCCAGCAC
TTGATGGTGGTAAACTATTATTAAACATTGTTGAAGGCATTCGGGGTAAACCACTACGGGTGGAAACGGAAAGTGTCATT
ACCTTGATTGGTTTTGGCCTCCTGATGTTATTAATGATTCTAGTAACTTGGAATGATATTCAGCGATATTTCTTCTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(7-411)

PDZ domain (PDZ_6)

(210-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.598

100

0.489
  eeP Streptococcus thermophilus LMD-9

48.598

100

0.489

Multiple sequence alignment