Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GVU25_RS11220 Genome accession   NZ_CP048014
Coordinates   2340470..2341105 (+) Length   211 a.a.
NCBI ID   WP_167846342.1    Uniprot ID   -
Organism   Acinetobacter towneri strain 205     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2335470..2346105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVU25_RS11205 (GVU25_11160) tnpC 2335791..2337437 (+) 1647 WP_167846037.1 IS66 family transposase -
  GVU25_RS11210 (GVU25_11165) - 2337536..2338369 (-) 834 WP_154320298.1 NAD-dependent epimerase/dehydratase family protein -
  GVU25_RS11215 (GVU25_11170) recG 2338406..2340451 (+) 2046 WP_167846341.1 ATP-dependent DNA helicase RecG -
  GVU25_RS11220 (GVU25_11175) comF 2340470..2341105 (+) 636 WP_167846342.1 ComF family protein Machinery gene
  GVU25_RS11225 (GVU25_11180) - 2341180..2341590 (-) 411 WP_004974664.1 NUDIX hydrolase -
  GVU25_RS11230 (GVU25_11185) - 2341592..2342194 (-) 603 WP_026438479.1 TIGR00730 family Rossman fold protein -
  GVU25_RS11235 (GVU25_11190) - 2342349..2343362 (+) 1014 WP_096901036.1 CorA family divalent cation transporter -
  GVU25_RS11240 (GVU25_11195) - 2343494..2343781 (-) 288 WP_154320296.1 lipid asymmetry maintenance protein MlaB -
  GVU25_RS11245 (GVU25_11200) - 2343794..2344429 (-) 636 WP_004974651.1 phospholipid-binding protein MlaC -
  GVU25_RS11250 (GVU25_11205) - 2344445..2345122 (-) 678 WP_167846343.1 outer membrane lipid asymmetry maintenance protein MlaD -
  GVU25_RS11255 (GVU25_11210) mlaE 2345122..2345901 (-) 780 WP_004974646.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24516.54 Da        Isoelectric Point: 9.3037

>NTDB_id=419450 GVU25_RS11220 WP_167846342.1 2340470..2341105(+) (comF) [Acinetobacter towneri strain 205]
MTQPINLLQCGIQWLCQLQPCQLCHSDTQWQHSVCQTCWQQLPWRSQAVQRQEMQIQVTFDYHYPINRIIQQFKYEQQLH
YQLLLVGALKQLSYPKIQAIVPMPISTARLTERGYNQSLLLAKGLARHLNVPIWQPVTRLQQHAQKGLSRLERLEDIQQQ
FQIQNAPKIRFRRVLIVDDVATTGSSIHALKQQLLKLGCQKVEAVCLASAE

Nucleotide


Download         Length: 636 bp        

>NTDB_id=419450 GVU25_RS11220 WP_167846342.1 2340470..2341105(+) (comF) [Acinetobacter towneri strain 205]
ATGACTCAGCCGATCAATCTACTACAATGCGGCATACAATGGCTGTGCCAACTGCAACCGTGTCAGCTCTGCCATAGCGA
CACGCAATGGCAACATTCGGTCTGTCAAACCTGTTGGCAACAATTGCCGTGGCGTAGCCAAGCGGTACAACGACAAGAAA
TGCAGATTCAAGTCACTTTTGATTATCACTATCCAATTAATCGCATCATTCAACAATTTAAATATGAACAGCAGTTACAT
TACCAACTGCTTTTAGTAGGCGCGCTAAAACAACTGTCTTATCCTAAAATCCAAGCCATTGTACCGATGCCAATTTCCAC
TGCCCGCTTGACTGAACGCGGCTACAATCAATCTTTATTGTTAGCAAAAGGACTAGCGCGGCATTTAAATGTCCCGATTT
GGCAACCTGTGACCCGCTTACAACAGCACGCGCAAAAAGGCTTAAGTCGCTTAGAACGATTGGAAGACATCCAACAGCAA
TTTCAAATTCAGAATGCGCCTAAAATCCGTTTCCGTCGGGTTTTAATTGTGGATGATGTGGCCACGACGGGCAGTTCAAT
TCATGCACTCAAACAGCAGTTGCTCAAGCTCGGCTGTCAAAAAGTCGAGGCGGTTTGTCTGGCCAGTGCTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.307

94.313

0.578
  comF Acinetobacter baumannii D1279779

60.804

94.313

0.573

Multiple sequence alignment