Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GVU25_RS00970 Genome accession   NZ_CP048014
Coordinates   219982..221544 (-) Length   520 a.a.
NCBI ID   WP_167845705.1    Uniprot ID   -
Organism   Acinetobacter towneri strain 205     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 214982..226544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVU25_RS00955 (GVU25_00955) gpmI 215694..217241 (+) 1548 WP_104852912.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  GVU25_RS00960 (GVU25_00960) - 217266..218429 (+) 1164 WP_004975690.1 S41 family peptidase -
  GVU25_RS00965 (GVU25_00965) pilR 218479..219912 (-) 1434 WP_167845704.1 sigma-54-dependent transcriptional regulator Regulator
  GVU25_RS00970 (GVU25_00970) pilS 219982..221544 (-) 1563 WP_167845705.1 sensor histidine kinase Regulator
  GVU25_RS00975 (GVU25_00975) - 221585..222220 (-) 636 WP_004975702.1 response regulator -
  GVU25_RS00980 (GVU25_00980) - 222436..223527 (+) 1092 WP_131260992.1 serine hydrolase -
  GVU25_RS00985 (GVU25_00985) thrC 223648..224787 (-) 1140 WP_004975706.1 threonine synthase -
  GVU25_RS00990 (GVU25_00990) - 224845..226149 (-) 1305 WP_004975708.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59252.71 Da        Isoelectric Point: 7.0490

>NTDB_id=419425 GVU25_RS00970 WP_167845705.1 219982..221544(-) (pilS) [Acinetobacter towneri strain 205]
MPDLKQHSELNQYHLGMWYGTYRLLIAFCLLLITLLTFQQLGTQYQHPGLYLYTLVCYFIFSCLQLISYKYIPFKSTQQL
TLFFAVDIIALSSLTFASDGPNLYLSLLFVITIFAASLLLQKRKALAITLIAMIMVIYQHFVGSLLDFSSLNNIGQSALL
AFLFWVVYGSGRIAVRRFQILENLNFSQSLELNRLQNINRYILEQTEMGYLVLDENCHVVLSNPAACHLLGIHPKYAHAT
YPLYKIQPDLFDLFKFDQLQDGEKFQFESQLSHFHVHIQVQKLKVPHQTLTLLALQDGRKINQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANNLFTGSDAAQQQLLSDMISKQATRIDKIIHDTLSMVKNKQTTPVAIQLNQFLPQFIQEDLPDAAS
QIQLTLTEPLSIQFDESQFRQVLINLIRNAIRHNAAQQPIEITVYPQTTYIYIDVRDFGAGVASQDLLYLFQPFFSTEIN
GTGLGLYLSHSFCEANQAKLSYVEQEQGACFRMKCLRAIE

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=419425 GVU25_RS00970 WP_167845705.1 219982..221544(-) (pilS) [Acinetobacter towneri strain 205]
ATGCCAGATTTAAAACAACATTCTGAGTTAAATCAGTATCATCTTGGCATGTGGTATGGTACTTACCGACTGCTGATTGC
CTTTTGTTTGCTGCTGATTACCCTGCTCACCTTTCAGCAGCTTGGCACACAATATCAGCACCCGGGTTTATATCTGTATA
CCTTGGTCTGCTATTTTATTTTTAGCTGCCTGCAACTGATCAGCTATAAATATATTCCTTTTAAAAGCACGCAACAACTG
ACCCTGTTTTTTGCAGTCGATATTATCGCGCTGAGTAGCCTGACTTTTGCCAGTGATGGCCCTAATTTATATTTAAGTCT
GCTGTTTGTGATCACGATTTTTGCAGCCTCTCTCTTGCTGCAAAAGCGTAAAGCCTTAGCCATTACCCTCATCGCGATGA
TTATGGTGATTTACCAACACTTTGTTGGGAGTTTGCTGGACTTTTCATCGCTAAATAATATTGGTCAAAGTGCGCTATTG
GCATTTTTATTTTGGGTGGTTTATGGCAGTGGACGTATTGCAGTACGGCGTTTCCAAATTTTAGAAAATCTAAATTTTTC
GCAATCTTTGGAATTAAACCGCCTACAAAATATCAACCGTTATATTTTAGAACAAACCGAAATGGGCTATTTGGTTTTAG
ATGAAAATTGCCATGTCGTCCTCAGCAACCCTGCAGCCTGTCATCTGTTGGGGATTCATCCTAAATATGCGCACGCGACC
TATCCATTGTATAAAATTCAGCCCGATTTATTTGATCTGTTCAAATTTGATCAATTGCAAGATGGAGAAAAATTTCAATT
CGAGTCGCAACTAAGTCATTTTCATGTGCATATTCAGGTACAAAAACTCAAAGTACCACATCAAACGCTGACTTTATTGG
CGCTGCAGGATGGACGTAAAATCAATCAGCAAGTCCAGCAACTCAAATTAGCCGCCTTAGGACAACTCTCTGCCAGTATT
GCGCACGAAATTCGCAACCCGTTGGCAGCCATTGTACAAGCCAACAATTTATTTACAGGCAGTGATGCTGCACAGCAACA
ATTGCTGTCGGACATGATCAGCAAACAAGCGACACGGATTGATAAGATTATTCACGACACGCTGAGTATGGTCAAAAATA
AACAAACCACGCCTGTCGCGATTCAGCTCAATCAATTTTTGCCACAATTCATTCAGGAAGATTTACCTGATGCAGCGAGT
CAAATTCAGCTTACACTGACCGAACCACTGAGCATCCAGTTTGATGAATCACAGTTTCGCCAAGTGCTGATTAACCTGAT
TCGTAACGCCATTCGACACAATGCTGCACAGCAGCCCATTGAGATTACGGTCTACCCGCAAACAACTTATATTTATATTG
ATGTGCGGGATTTTGGTGCAGGTGTCGCCAGTCAAGATCTCCTCTATCTGTTCCAGCCATTTTTCAGTACCGAAATCAAT
GGAACTGGTTTAGGATTGTATCTATCGCATAGTTTTTGCGAGGCGAATCAAGCCAAGCTGAGCTATGTAGAACAAGAACA
AGGCGCATGTTTCAGGATGAAATGTCTACGTGCCATTGAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.802

97.115

0.581

Multiple sequence alignment