Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GWC79_RS10910 Genome accession   NZ_CP048008
Coordinates   2229539..2230411 (-) Length   290 a.a.
NCBI ID   WP_012990865.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain CGMH-SL118     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2224539..2235411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWC79_RS10895 xerC 2224914..2225807 (-) 894 WP_002459293.1 tyrosine recombinase XerC -
  GWC79_RS10900 trmFO 2225939..2227246 (-) 1308 WP_002459294.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GWC79_RS10905 topA 2227298..2229373 (-) 2076 WP_176746553.1 type I DNA topoisomerase -
  GWC79_RS10910 dprA 2229539..2230411 (-) 873 WP_012990865.1 DNA-processing protein DprA Machinery gene
  GWC79_RS10915 - 2231070..2232305 (-) 1236 WP_002478287.1 aminoacyltransferase -
  GWC79_RS10920 - 2232319..2233467 (-) 1149 WP_002478288.1 LysM peptidoglycan-binding domain-containing protein -
  GWC79_RS10925 sucD 2233664..2234572 (-) 909 WP_002478289.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33042.89 Da        Isoelectric Point: 8.3798

>NTDB_id=419390 GWC79_RS10910 WP_012990865.1 2229539..2230411(-) (dprA) [Staphylococcus lugdunensis strain CGMH-SL118]
MDDIVLLKLRYSGIQAPQFQRLIHAYPNFLSFSEYDLLNLLSKTEIKKWFGDIAAQYKRISEDYILTSLYDASVKFITIN
SQCYSTLLKEIYDFPPILFYRGDISLLNSNTTLAVVGSRKATSYSYKALDFLFSQFNRRFTIVSGLAKGADSMAHELAIQ
HHHATIAVLGFGHLAHYPKETYILRQKIEAHHLSISEYLPFEPVTKYHFPQRNRLISGISKGVLITEAEKRSGSQITIAH
ALDQNRNVYVLPGDLFNPLTQGNLYRAREGACIVTGAEDILMDYDINKVF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=419390 GWC79_RS10910 WP_012990865.1 2229539..2230411(-) (dprA) [Staphylococcus lugdunensis strain CGMH-SL118]
GTGGACGATATTGTTTTATTAAAATTACGTTATAGTGGCATACAAGCGCCTCAATTTCAACGGCTTATACATGCGTACCC
TAACTTTTTATCATTTTCAGAGTATGATTTACTTAATTTATTATCGAAGACAGAAATTAAAAAATGGTTCGGAGACATAG
CTGCACAATACAAACGGATTTCTGAAGATTATATTTTAACATCATTATACGATGCCTCTGTCAAATTTATCACTATCAAT
AGCCAATGTTATTCTACCTTATTAAAAGAAATTTATGATTTTCCACCAATCCTATTTTATCGTGGTGATATTTCACTCCT
TAATTCAAACACTACATTAGCCGTTGTCGGTTCTCGTAAAGCCACAAGTTATTCCTACAAAGCTTTAGACTTTTTATTTA
GCCAATTTAATCGTCGCTTCACGATTGTTTCAGGTTTAGCTAAAGGAGCCGATAGCATGGCACACGAATTAGCTATACAA
CACCATCATGCGACAATTGCAGTACTTGGATTTGGACATCTCGCACATTATCCTAAAGAAACATATATTTTACGTCAAAA
AATTGAAGCACATCACTTATCAATCAGTGAATATTTACCTTTCGAACCAGTAACGAAATATCATTTTCCACAACGAAATC
GCTTAATAAGCGGTATTTCTAAAGGTGTACTGATTACCGAAGCTGAAAAACGTAGTGGTAGTCAGATTACAATCGCACAT
GCACTTGACCAAAATAGAAATGTTTATGTTCTTCCAGGAGATCTATTTAATCCACTTACACAAGGTAATTTATATCGTGC
ACGAGAAGGAGCGTGTATTGTTACAGGAGCTGAAGATATTTTAATGGATTATGATATTAATAAAGTTTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

48.136

100

0.49
  dprA Staphylococcus aureus MW2

48.136

100

0.49

Multiple sequence alignment