Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GWC79_RS09325 Genome accession   NZ_CP048008
Coordinates   1891400..1891999 (+) Length   199 a.a.
NCBI ID   WP_228865536.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain CGMH-SL118     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1886400..1896999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWC79_RS09290 yqeK 1886611..1887195 (+) 585 WP_002458966.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  GWC79_RS09295 rsfS 1887196..1887549 (+) 354 WP_228865252.1 ribosome silencing factor -
  GWC79_RS09300 - 1887550..1888275 (+) 726 WP_002458968.1 class I SAM-dependent DNA methyltransferase -
  GWC79_RS09305 - 1888372..1888821 (+) 450 WP_225307302.1 hypothetical protein -
  GWC79_RS13790 - 1888793..1889029 (+) 237 WP_225307303.1 ComEA family DNA-binding protein -
  GWC79_RS09315 - 1889332..1889793 (+) 462 WP_002458970.1 ComE operon protein 2 -
  GWC79_RS09320 - 1889799..1891364 (+) 1566 WP_228865253.1 ComEC/Rec2 family competence protein -
  GWC79_RS09325 comEC 1891400..1891999 (+) 600 WP_228865536.1 MBL fold metallo-hydrolase Machinery gene
  GWC79_RS09330 holA 1892066..1893040 (+) 975 WP_002478106.1 DNA polymerase III subunit delta -
  GWC79_RS09335 rpsT 1893088..1893336 (-) 249 WP_002458974.1 30S ribosomal protein S20 -
  GWC79_RS09340 lepA 1893693..1895516 (+) 1824 WP_002478107.1 translation elongation factor 4 -
  GWC79_RS09345 hemW 1895699..1896820 (+) 1122 WP_002478108.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 23170.95 Da        Isoelectric Point: 10.1302

>NTDB_id=419383 GWC79_RS09325 WP_228865536.1 1891400..1891999(+) (comEC) [Staphylococcus lugdunensis strain CGMH-SL118]
MTHPHIDHMGELTYLMQHIRIKQLVINSKSFPISQLNVIKKWCSKYNIILINADHINTMHFDDSTIQFLRSYIYDSQDKN
EQSIVLLIKYHYKTILLMGDASQRNEKILMKKYHLPHIDILKVGHHGSKTSSSMIFLKQIQPKISIISSGKHNKYHHPSI
ETIHKFLSIHSKLFNTQDKGEISVSLDSKLTIKLNHGNH

Nucleotide


Download         Length: 600 bp        

>NTDB_id=419383 GWC79_RS09325 WP_228865536.1 1891400..1891999(+) (comEC) [Staphylococcus lugdunensis strain CGMH-SL118]
ATTACACATCCACACATTGATCATATGGGTGAATTAACTTATCTTATGCAGCATATTAGAATCAAACAACTAGTAATAAA
TAGTAAAAGCTTTCCTATTTCTCAATTAAATGTGATAAAAAAATGGTGTTCAAAATACAATATAATACTGATTAATGCTG
ATCATATCAACACTATGCACTTTGATGATTCAACAATTCAATTTTTGAGAAGTTATATTTATGACAGTCAAGATAAAAAC
GAACAGTCTATTGTTTTATTAATCAAATACCATTACAAAACGATATTGCTAATGGGCGACGCTAGTCAACGTAATGAAAA
AATACTTATGAAAAAGTACCATTTACCTCACATAGATATTTTGAAAGTAGGGCATCATGGCAGCAAAACGAGTAGCTCTA
TGATATTTTTAAAACAAATTCAACCTAAAATAAGTATTATTTCTAGCGGTAAACATAACAAATATCATCATCCATCTATA
GAAACTATTCATAAATTCTTATCTATACACAGTAAATTATTTAATACTCAAGATAAAGGCGAAATCAGTGTGTCACTTGA
TTCCAAATTAACGATAAAATTAAATCATGGTAATCACTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(2-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

48.744

100

0.487
  comEC Staphylococcus aureus MW2

48.744

100

0.487

Multiple sequence alignment