Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GWC79_RS06440 Genome accession   NZ_CP048008
Coordinates   1355170..1355571 (+) Length   133 a.a.
NCBI ID   WP_002461219.1    Uniprot ID   A0A853V538
Organism   Staphylococcus lugdunensis strain CGMH-SL118     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1350170..1360571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWC79_RS06415 - 1351466..1351867 (+) 402 WP_002461226.1 F0F1 ATP synthase subunit epsilon -
  GWC79_RS06420 - 1351993..1352226 (+) 234 WP_002478965.1 DUF1146 family protein -
  GWC79_RS06425 murA 1352390..1353655 (+) 1266 WP_002461223.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GWC79_RS06430 fabZ 1353692..1354132 (+) 441 WP_002461222.1 3-hydroxyacyl-ACP dehydratase FabZ -
  GWC79_RS06435 - 1354529..1354981 (-) 453 WP_002478966.1 YwpF-like family protein -
  GWC79_RS06440 ssb 1355170..1355571 (+) 402 WP_002461219.1 single-stranded DNA-binding protein Machinery gene
  GWC79_RS06445 - 1356050..1356757 (+) 708 WP_002478967.1 transglycosylase family protein -
  GWC79_RS06450 tenA 1357170..1357847 (+) 678 WP_002461217.1 thiaminase II -
  GWC79_RS06455 thiD 1357852..1358673 (+) 822 WP_002478968.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  GWC79_RS06460 thiM 1358666..1359454 (+) 789 WP_002478969.1 hydroxyethylthiazole kinase -
  GWC79_RS06465 thiE 1359457..1360095 (+) 639 WP_002478970.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15388.56 Da        Isoelectric Point: 6.7151

>NTDB_id=419371 GWC79_RS06440 WP_002461219.1 1355170..1355571(+) (ssb) [Staphylococcus lugdunensis strain CGMH-SL118]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE

Nucleotide


Download         Length: 402 bp        

>NTDB_id=419371 GWC79_RS06440 WP_002461219.1 1355170..1355571(+) (ssb) [Staphylococcus lugdunensis strain CGMH-SL118]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACCAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V538

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

69.697

99.248

0.692
  ssb Staphylococcus aureus MW2

68.939

99.248

0.684

Multiple sequence alignment