Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GWC80_RS08420 Genome accession   NZ_CP048007
Coordinates   1762477..1763349 (-) Length   290 a.a.
NCBI ID   WP_002491838.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain CGMH-SL131     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1757477..1768349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWC80_RS08405 xerC 1757852..1758745 (-) 894 WP_002491833.1 tyrosine recombinase XerC -
  GWC80_RS08410 trmFO 1758877..1760184 (-) 1308 WP_002459294.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GWC80_RS08415 topA 1760236..1762311 (-) 2076 WP_172412355.1 type I DNA topoisomerase -
  GWC80_RS08420 dprA 1762477..1763349 (-) 873 WP_002491838.1 DNA-processing protein DprA Machinery gene
  GWC80_RS08425 - 1764008..1765243 (-) 1236 WP_037540675.1 aminoacyltransferase -
  GWC80_RS08430 sucD 1765404..1766312 (-) 909 WP_002478289.1 succinate--CoA ligase subunit alpha -
  GWC80_RS08435 sucC 1766334..1767500 (-) 1167 WP_002493081.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33024.83 Da        Isoelectric Point: 7.9749

>NTDB_id=419351 GWC80_RS08420 WP_002491838.1 1762477..1763349(-) (dprA) [Staphylococcus lugdunensis strain CGMH-SL131]
MDDIVLLKLRYSGIQAPQFQRLIHAYPNFLSFSEDDLLNLLSKTEIKKWFGDIAAQYKRISEDYILTSLYDASVKFITIN
SQCYSTLLKEIYDFPPILFYRGDISLLNSNTTLAVVGSRKATSYSYKALDFLFSQFNRRFTIVSGLAKGADSMAHELAIQ
HHHATIAVLGFGHLTHYPKETYILRQKIEAHHLSISEYLPFEPVTKYHFPQRNRLISGISKGVLITEAEKRSGSQITIAH
ALDQNRNVYVLPGDLFNPLTQGNLYRAREGACIVTGAEDILMDYDINKVF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=419351 GWC80_RS08420 WP_002491838.1 1762477..1763349(-) (dprA) [Staphylococcus lugdunensis strain CGMH-SL131]
GTGGACGATATTGTTTTATTAAAATTACGTTATAGTGGTATACAAGCGCCTCAATTTCAACGGCTTATACATGCGTACCC
TAACTTTTTATCATTTTCAGAGGATGATTTACTTAATTTATTATCGAAGACAGAAATTAAAAAATGGTTCGGAGACATAG
CTGCACAATACAAACGGATTTCTGAAGATTATATTTTAACATCATTATACGATGCCTCTGTCAAATTTATCACTATCAAT
AGCCAATGTTATTCTACCTTATTAAAAGAAATTTATGATTTTCCACCAATCCTATTTTATCGTGGTGATATTTCACTCCT
TAATTCAAACACTACATTAGCCGTTGTCGGTTCTCGTAAAGCCACAAGTTATTCCTACAAAGCTTTAGACTTTTTATTTA
GCCAATTTAATCGTCGCTTCACGATTGTTTCAGGTTTAGCCAAAGGAGCCGATAGCATGGCACACGAATTAGCTATACAA
CACCATCATGCGACAATCGCAGTGCTTGGATTTGGACATCTCACACATTATCCTAAAGAAACATATATTTTACGTCAAAA
AATTGAAGCTCATCACTTATCAATCAGTGAATATTTACCTTTCGAACCAGTAACGAAATATCATTTTCCACAACGAAATC
GCTTAATAAGCGGTATTTCTAAAGGTGTACTGATTACCGAAGCTGAAAAACGTAGTGGTAGTCAGATTACAATCGCACAT
GCACTTGACCAAAATAGAAATGTTTATGTTCTTCCAGGAGATCTATTTAATCCACTTACACAAGGTAATTTATATCGTGC
ACGAGAAGGAGCGTGTATTGTTACAGGAGCTGAAGATATTTTAATGGATTATGATATTAATAAAGTTTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

48.475

100

0.493
  dprA Staphylococcus aureus MW2

48.475

100

0.493

Multiple sequence alignment