Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CFU_RS02415 Genome accession   NC_015856
Coordinates   559389..560870 (-) Length   493 a.a.
NCBI ID   WP_014004454.1    Uniprot ID   G0AGG9
Organism   Collimonas fungivorans Ter331     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 554389..565870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFU_RS02395 (CFU_0458) aroKB 555084..556820 (+) 1737 WP_041741110.1 bifunctional shikimate kinase/3-dehydroquinate synthase AroKB -
  CFU_RS02400 (CFU_0459) - 556817..557968 (+) 1152 WP_014004451.1 deoxyguanosinetriphosphate triphosphohydrolase -
  CFU_RS02405 (CFU_0460) - 558068..558757 (+) 690 WP_050808454.1 DUF4197 domain-containing protein -
  CFU_RS02410 (CFU_0461) raiA 558878..559231 (-) 354 WP_014004453.1 ribosome-associated translation inhibitor RaiA -
  CFU_RS02415 (CFU_0462) rpoN/rpoN1 559389..560870 (-) 1482 WP_014004454.1 RNA polymerase factor sigma-54 Machinery gene
  CFU_RS02420 (CFU_0463) lptB 560988..561749 (-) 762 WP_238531388.1 LPS export ABC transporter ATP-binding protein -
  CFU_RS02425 (CFU_0464) lptA 561758..562300 (-) 543 WP_041741111.1 lipopolysaccharide transport periplasmic protein LptA -
  CFU_RS02430 (CFU_0465) lptC 562365..562958 (-) 594 WP_014004457.1 LPS export ABC transporter periplasmic protein LptC -
  CFU_RS02435 (CFU_0466) - 562955..563536 (-) 582 WP_014004458.1 HAD family hydrolase -
  CFU_RS02440 (CFU_0467) - 563536..564567 (-) 1032 WP_014004459.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 493 a.a.        Molecular weight: 54903.46 Da        Isoelectric Point: 4.9708

>NTDB_id=41934 CFU_RS02415 WP_014004454.1 559389..560870(-) (rpoN/rpoN1) [Collimonas fungivorans Ter331]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPLLERVDDPLDNSVRLLADGAISGATSTMDAPVGDS
EVSSSPSESEAGLDTPPAAENGPENGDSEWSFDDVARSSKTPDDEDARPQLEAHECTLREHLLQQMRETLNDIRDRALVE
LTIDALDDNGYLEESLEEILERLPPELEIAIEELSTALKMVQSFDPAGVGARNAAECLGLQIKRFIKVPFVTRRLALAIV
QDHLMLFAQRDFNKIKKALDCDDEDLREAQAVIKQCNPHPGAPFAANASDYVVPDVIVRRSKQGWQVMLNNDVMPRLRVN
VLYANILKQSKGDGALTSQLQEAKWLIKNMRQRFDTILRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISR
VTTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIKQLIGAEDTKNPFSDSKIADMLAEQGMVVARRTVAKYRE
ALKIPSVNLRKAL

Nucleotide


Download         Length: 1482 bp        

>NTDB_id=41934 CFU_RS02415 WP_014004454.1 559389..560870(-) (rpoN/rpoN1) [Collimonas fungivorans Ter331]
ATGAAACAATCACTCCAGCTACGCACCTCGCAGCATCTTGCGCTGACGCCCCAGTTGCAGCAGTCGATCCGGCTGCTGCA
ATTGTCTACGCTCGAACTGCACCAGGAGCTGGAACAGATCCTGTCCGACAATCCGCTGCTGGAACGGGTCGACGATCCGC
TCGATAACTCCGTGCGCCTGCTGGCGGACGGCGCCATCAGCGGCGCCACCTCAACCATGGACGCGCCGGTGGGCGACAGC
GAAGTGAGCAGCTCGCCGAGCGAAAGCGAAGCCGGGCTGGACACGCCTCCGGCCGCCGAAAACGGCCCGGAAAACGGCGA
CAGCGAATGGAGTTTCGACGATGTCGCGCGCAGCTCGAAGACGCCGGACGACGAAGATGCGCGGCCGCAGCTGGAAGCCC
ACGAATGCACGCTGCGCGAACACCTGCTGCAGCAGATGCGCGAGACGCTGAACGACATACGCGACCGGGCGCTGGTCGAG
CTGACCATCGATGCGCTGGACGACAACGGCTACCTGGAAGAATCGCTGGAAGAGATCCTCGAGCGCCTGCCGCCGGAACT
GGAAATCGCCATCGAAGAGCTGTCAACCGCGCTGAAAATGGTGCAGAGTTTCGACCCGGCCGGCGTCGGCGCCCGCAATG
CGGCGGAATGCCTGGGCTTGCAGATCAAGCGTTTTATCAAAGTGCCGTTTGTCACGCGCCGCCTGGCGTTGGCGATCGTA
CAAGACCACCTGATGCTTTTTGCGCAACGCGATTTCAACAAGATCAAGAAGGCGCTCGACTGCGACGACGAGGACCTGCG
TGAGGCGCAGGCCGTCATCAAGCAGTGCAATCCGCATCCGGGCGCGCCGTTCGCCGCCAACGCTTCCGATTATGTGGTGC
CGGACGTGATCGTCAGGCGCAGCAAGCAGGGTTGGCAGGTAATGCTGAACAACGACGTCATGCCAAGGCTCAGGGTAAAT
GTCCTGTATGCCAACATTCTCAAGCAAAGCAAGGGCGACGGCGCCCTCACTTCGCAGCTGCAGGAAGCCAAGTGGCTGAT
CAAGAATATGCGGCAGCGATTCGACACCATCCTGCGCGTGGCGCAGGCGATCGTCGAGCGCCAGAGGAATTTCTTTTCGC
ACGGGGCGGTCGCCATGCGGCCGCTTGTGTTGCGTGAAATAGCTGATACACTGGGACTACACGAGAGTACTATTTCTCGT
GTAACCACTCAGAAATACATGCTCACTCCCCACGGGATGTTTGAACTGAAGTATTTCTTCGGCAGCCATGTTGCTACTGA
GGCAGGTGGAGAGGCTTCCTCAACGGCAATCAGGGCACTCATTAAGCAATTGATAGGAGCGGAAGATACAAAAAATCCTT
TCTCTGACAGCAAGATTGCCGACATGCTTGCGGAACAAGGTATGGTGGTCGCCCGCCGCACCGTCGCAAAATATCGCGAA
GCACTGAAAATTCCGTCAGTTAATTTACGCAAAGCCTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(336-491)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(132-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0AGG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

59.486

100

0.611

Multiple sequence alignment