Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GWC80_RS04740 Genome accession   NZ_CP048007
Coordinates   1026147..1026548 (+) Length   133 a.a.
NCBI ID   WP_002461219.1    Uniprot ID   A0A853V538
Organism   Staphylococcus lugdunensis strain CGMH-SL131     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1021147..1031548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWC80_RS04720 - 1021601..1023355 (+) 1755 WP_037540683.1 ABC transporter ATP-binding protein -
  GWC80_RS04725 - 1023339..1025059 (+) 1721 Protein_935 ABC transporter ATP-binding protein -
  GWC80_RS04730 - 1025061..1025165 (+) 105 Protein_936 IS200/IS605 family transposase -
  GWC80_RS04735 - 1025505..1025957 (-) 453 WP_002461221.1 YwpF-like family protein -
  GWC80_RS04740 ssb 1026147..1026548 (+) 402 WP_002461219.1 single-stranded DNA-binding protein Machinery gene
  GWC80_RS04745 - 1027027..1027734 (+) 708 WP_249689276.1 transglycosylase family protein -
  GWC80_RS04750 tenA 1028147..1028824 (+) 678 WP_002461217.1 thiaminase II -
  GWC80_RS04755 thiD 1028829..1029650 (+) 822 WP_002478968.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  GWC80_RS04760 thiM 1029643..1030431 (+) 789 WP_002492088.1 hydroxyethylthiazole kinase -
  GWC80_RS04765 thiE 1030434..1031072 (+) 639 WP_002492090.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15388.56 Da        Isoelectric Point: 6.7151

>NTDB_id=419333 GWC80_RS04740 WP_002461219.1 1026147..1026548(+) (ssb) [Staphylococcus lugdunensis strain CGMH-SL131]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE

Nucleotide


Download         Length: 402 bp        

>NTDB_id=419333 GWC80_RS04740 WP_002461219.1 1026147..1026548(+) (ssb) [Staphylococcus lugdunensis strain CGMH-SL131]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACTAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V538

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

69.697

99.248

0.692
  ssb Staphylococcus aureus MW2

68.939

99.248

0.684

Multiple sequence alignment