Detailed information NTG0419326

Bioinformatically predicted

Overview

• Name: ccrA
• Type: Machinery gene
• Locus tag: GWC80_RS00310
• Genome accession: NZ_CP048007
• Coordinates: 68258..69607 (-)
• Length: 449 a.a.
• NCBI ID: WP_001573628.1
• Uniprot ID: A0A3G1RMM3
• Organism: Staphylococcus lugdunensis strain CGMH-SL131
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Genomic Context

Location: 63258..74607

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GWC80_RS00285	gtfB	63319..64638 (+)	1320	WP_002468074.1	accessory Sec system glycosylation chaperone GtfB	-
GWC80_RS00290	-	64819..65322 (-)	504	WP_058649860.1	DUF1643 domain-containing protein	-
GWC80_RS00295	-	65337..65651 (-)	315	WP_058649861.1	DUF960 family protein	-
GWC80_RS00300	-	65744..66085 (-)	342	WP_058649862.1	SAUGI family uracil-DNA glycosylase inhibitor	-
GWC80_RS00305	ccrB	66608..68236 (-)	1629	WP_172412330.1	recombinase family protein	Machinery gene
GWC80_RS00310	ccrA	68258..69607 (-)	1350	WP_001573628.1	recombinase family protein	Machinery gene
GWC80_RS00315	-	69841..71628 (-)	1788	WP_058649864.1	DUF927 domain-containing protein	-
GWC80_RS00320	-	71628..71924 (-)	297	WP_002454339.1	single-stranded DNA-binding protein	-
GWC80_RS00325	-	72117..73163 (-)	1047	WP_001042023.1	hypothetical protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 52636.28 Da
• Isoelectric Point: 10.0062

>NTDB_id=419326 GWC80_RS00310 WP_001573628.1 68258..69607(-) (ccrA) [Staphylococcus lugdunensis strain CGMH-SL131]
MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQITQLIQQGQCDILCCYRLNRLHRN
LKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRFKLNIFISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYH
NGTFIINQNESPTVKAVFNYYIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASRFVCDFKGINAQTLEDKVLEV
CRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLIEKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQNTIQ
NIIQKRFTLNMLYPYIDEILITKSKTLMGIYFKNEPLNIVNQTTQSSIA

Nucleotide

• Length: 1350 bp

>NTDB_id=419326 GWC80_RS00310 WP_001573628.1 68258..69607(-) (ccrA) [Staphylococcus lugdunensis strain CGMH-SL131]
ATGAAACAAGTCATAGGCTATTTACGTCAAAGTACGATGAAACAACAATCTCTTGCAGCACAGAAACAAGCTATCGAAGC
AATAGCCGAAAAACATCATATTCAACATATCAACTTTTATAGCGACAAACAATCAGGACGCAAAGATAATCGTAGTGGGT
ATCGACAAATAACACAATTAATTCAACAAGGACAGTGTGACATATTATGCTGTTATCGTCTTAATAGGTTGCATCGTAAT
TTGAAAAATGCATTAAAACTCATCAAATTATGTCAAACATATCGTGTTCATATCTTAAGTGTGCATGATGGTTATTTTGA
TATGGATCAAGCTTTCGACCGATTCAAGCTTAATATTTTTATCAGCTTGGCCGAACTTGAATCAGATAACATTGGAGAAC
AAGTCAGAAATGGGCTTCAAGAAAAAGCAAAGCAAGGTCGATTGATTACAACCCATGCGCCCTTTGGTTACGAATATCAC
AACGGAACATTCATCATCAATCAAAATGAGTCACCAACGGTAAAGGCTGTATTCAATTATTACATTAAAGGTCATGGTTA
TAAGAAAATTGCACAGTTATTAGAAGAAGATAACACGTATATCAATCGACAACCCTATCAAGTTCGTAACATTATTATCA
ATCCTAATTATTGTGGTCGTGTCAACAATCAATATGGTCAATTCGACAATATGTTTCCTTCTATTGTTTCCACAAGTATA
TATGAGCAAGCGCAGAGACTTCGATTGCAAAAACAAACCAAACAGACACCTTCGGATAATCAACTCAAACAAAAAATCAA
ATGCCCATGTTGTAATGCAACACTTACAAATATGACCATTAGAAAAAAGAATCATACATTACGTTACTACGTCTGTCCTA
AAAACATGAATGCTTCACGCTTTGTCTGTGATTTTAAAGGCATCAATGCACAAACACTTGAAGATAAAGTATTAGAAGTG
TGCCGAGACTTTTATCAAAATCAACGCATCTACACAAAAATTAAAAGTGCGATTGACAAACGCATCAAAAGACAAAGAAA
CATAGAAAAACATCACACATTGACTCAAGAACAACTGATAGAAAAGTTGGCACAAGGCATCATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACGTCAACAACCGCAACGCACTACATCTATCAATGGGCATCAAATACAAAACACCATTCAA
AATATTATTCAAAAACGTTTCACGTTAAACATGCTGTATCCCTACATTGATGAAATTCTTATCACAAAAAGTAAAACACT
AATGGGTATCTATTTCAAAAATGAACCCTTAAACATCGTCAATCAAACAACGCAATCGTCAATTGCATAA

Domains

Predicted by InterProScan.

• Recombinase (Recombinase) (169-248)

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (262-321)

• Resolvase, N terminal domain (Resolvase) (4-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrA	Staphylococcus aureus N315	95.768	100	0.958
ccrA	Staphylococcus aureus COL	75.947	100	0.759