Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   GWC80_RS00305 Genome accession   NZ_CP048007
Coordinates   66608..68236 (-) Length   542 a.a.
NCBI ID   WP_172412330.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain CGMH-SL131     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 61608..73236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWC80_RS00280 gtfA 61818..63326 (+) 1509 WP_001551920.1 accessory Sec system glycosyltransferase GtfA -
  GWC80_RS00285 gtfB 63319..64638 (+) 1320 WP_002468074.1 accessory Sec system glycosylation chaperone GtfB -
  GWC80_RS00290 - 64819..65322 (-) 504 WP_058649860.1 DUF1643 domain-containing protein -
  GWC80_RS00295 - 65337..65651 (-) 315 WP_058649861.1 DUF960 family protein -
  GWC80_RS00300 - 65744..66085 (-) 342 WP_058649862.1 SAUGI family uracil-DNA glycosylase inhibitor -
  GWC80_RS00305 ccrB 66608..68236 (-) 1629 WP_172412330.1 recombinase family protein Machinery gene
  GWC80_RS00310 ccrA 68258..69607 (-) 1350 WP_001573628.1 recombinase family protein Machinery gene
  GWC80_RS00315 - 69841..71628 (-) 1788 WP_058649864.1 DUF927 domain-containing protein -
  GWC80_RS00320 - 71628..71924 (-) 297 WP_002454339.1 single-stranded DNA-binding protein -
  GWC80_RS00325 - 72117..73163 (-) 1047 WP_001042023.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62660.88 Da        Isoelectric Point: 9.8616

>NTDB_id=419325 GWC80_RS00305 WP_172412330.1 66608..68236(-) (ccrB) [Staphylococcus lugdunensis strain CGMH-SL131]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRILKDAKDGYIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADAIEDYVMKQILEIVKSDKVIQQVVARVNQENQVDCASLHHDIAYKQQQYD
EVQIKLNNLIKTIEDNPDLTSVIRPSIQKYEKKLNDITNQINQLKNQQNEDMTLFNAKEISKLLQHIFHDIKHIEKSRLK
ALYLSVIDRIDIKKDGNHKKHFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=419325 GWC80_RS00305 WP_172412330.1 66608..68236(-) (ccrB) [Staphylococcus lugdunensis strain CGMH-SL131]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTTTCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAAGTTAAAGATATATACGCTGACCGTGGTA
TTTCAGGTAAATCTATGAATCGACCTGAGCTCCAACGTATATTGAAGGATGCGAAAGATGGCTATATCGACTGTGTTATG
GTCTACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTCAGTTTGTCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGTAAC
TTGCCGCTGGGCTATGACAAAATACCTAATAGTAAACACGAACTGATGATTAATCAACATGAAGCTAATATTGTGAAATA
TATATTCGAGTCCTATGCCAAAGGACATGGCTATCGTAAAATAGCCAATGCATTAAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA
ATCTGCTTACAGGCATTATTCACTGTCCTCAATGTGGCGCACCTATGGCAGCAAGCAATACCACGAATACACTTAAAGAC
GGGACCAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGCTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGCGATTGAAGATTATGTGATGAAGCAAATACTCGAAATAGTCAAAAGTGATAAAGTCATTCAACAGGTTG
TAGCACGTGTTAATCAAGAAAATCAAGTTGATTGTGCGTCACTTCATCACGATATCGCTTATAAGCAACAACAATATGAT
GAAGTACAAATCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGAAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATATGACTT
TATTTAATGCCAAAGAAATTAGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA
GCATTGTATCTATCAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAACATTTCTATGTCACACTCAA
ACTTAATAACGAAATCATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTGTTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterProScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

97.786

100

0.978

Multiple sequence alignment