Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | ATC_RS14315 | Genome accession | NC_015850 |
| Coordinates | 2912932..2914299 (+) | Length | 455 a.a. |
| NCBI ID | WP_004869549.1 | Uniprot ID | A0A059ZYE0 |
| Organism | Acidithiobacillus caldus SM-1 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2907932..2919299
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATC_RS14300 (Atc_2858) | aroE | 2908783..2909655 (+) | 873 | WP_004869542.1 | shikimate dehydrogenase | - |
| ATC_RS14305 (Atc_2859) | pilB | 2909631..2911337 (+) | 1707 | WP_004869544.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ATC_RS14310 (Atc_2860) | - | 2911382..2912935 (+) | 1554 | WP_014003616.1 | sensor histidine kinase | - |
| ATC_RS14315 (Atc_2861) | pilR | 2912932..2914299 (+) | 1368 | WP_004869549.1 | sigma-54-dependent transcriptional regulator | Regulator |
| ATC_RS14320 (Atc_2862) | - | 2914289..2915074 (+) | 786 | WP_004869552.1 | prepilin peptidase | - |
| ATC_RS14325 (Atc_2863) | coaE | 2915093..2915680 (+) | 588 | WP_004869555.1 | dephospho-CoA kinase | - |
| ATC_RS14330 (Atc_2864) | zapD | 2915785..2916537 (+) | 753 | WP_226823468.1 | cell division protein ZapD | - |
| ATC_RS14335 (Atc_2865) | - | 2916549..2917556 (+) | 1008 | WP_004869560.1 | class 1 fructose-bisphosphatase | - |
| ATC_RS14340 (Atc_2866) | - | 2917639..2918385 (-) | 747 | WP_014003617.1 | complement resistance protein TraT | - |
| ATC_RS14345 (Atc_2867) | - | 2918531..2918956 (+) | 426 | WP_226047576.1 | ClpXP protease specificity-enhancing factor | - |
Sequence
Protein
Download Length: 455 a.a. Molecular weight: 49960.73 Da Isoelectric Point: 6.9080
>NTDB_id=41932 ATC_RS14315 WP_004869549.1 2912932..2914299(+) (pilR) [Acidithiobacillus caldus SM-1]
MNASVRQRKRALIVDDEPTIVELLGITLEGMGVEVLACHSLAEAFAALGKGPPSLCLTDLRLGDGSGMQLLHKVRELYPQ
VPVAVITAYASAEGAVEAMRAGAFDFMTKPIELARLRRLVSEAIALGELPRESVDLSERLVGESPGMVALRERVRLLGRS
NAPVHIRGESGTGKELVARAIHDASPRREKAFIAVNCGAIPENLMESEFFGAEKGAYSGAVQRREGLFVAANGGTLFLDE
IAELPLTTQVKLLRVLQERVVRPLGGLREQSIDIRLICATHRDLRRMVEEGTFREDLFYRINVVPIEIPPLRERREDIPL
LAQTLLQRLCQRHGRPPANLAPAALAWLSNRDFPGNVRELENLLERALALQSQPLLHREDLEPTAELAVARAPLPAAAPA
ADTALTKRLAEAEWRYLADLQIRLGDRPEEMAKALGISLQSLHLRLARGGSNRDS
MNASVRQRKRALIVDDEPTIVELLGITLEGMGVEVLACHSLAEAFAALGKGPPSLCLTDLRLGDGSGMQLLHKVRELYPQ
VPVAVITAYASAEGAVEAMRAGAFDFMTKPIELARLRRLVSEAIALGELPRESVDLSERLVGESPGMVALRERVRLLGRS
NAPVHIRGESGTGKELVARAIHDASPRREKAFIAVNCGAIPENLMESEFFGAEKGAYSGAVQRREGLFVAANGGTLFLDE
IAELPLTTQVKLLRVLQERVVRPLGGLREQSIDIRLICATHRDLRRMVEEGTFREDLFYRINVVPIEIPPLRERREDIPL
LAQTLLQRLCQRHGRPPANLAPAALAWLSNRDFPGNVRELENLLERALALQSQPLLHREDLEPTAELAVARAPLPAAAPA
ADTALTKRLAEAEWRYLADLQIRLGDRPEEMAKALGISLQSLHLRLARGGSNRDS
Nucleotide
Download Length: 1368 bp
>NTDB_id=41932 ATC_RS14315 WP_004869549.1 2912932..2914299(+) (pilR) [Acidithiobacillus caldus SM-1]
GTGAATGCCAGTGTTCGGCAAAGGAAACGGGCGCTCATCGTCGACGATGAGCCCACCATCGTGGAACTGCTGGGTATCAC
CTTGGAAGGCATGGGGGTCGAGGTCTTGGCTTGCCATAGCCTGGCCGAAGCCTTTGCCGCCCTGGGCAAGGGCCCACCAT
CGCTGTGCCTGACGGATCTGCGCCTGGGCGACGGCTCGGGCATGCAACTCCTGCACAAGGTCCGCGAACTCTACCCGCAG
GTGCCGGTGGCGGTGATCACCGCCTACGCCTCGGCGGAGGGCGCGGTGGAAGCCATGCGCGCCGGCGCCTTCGACTTCAT
GACCAAGCCCATAGAACTGGCACGTCTGCGCCGCCTGGTGAGCGAGGCCATCGCCCTTGGGGAGTTGCCCCGGGAGAGCG
TAGATCTCAGCGAGCGCCTGGTGGGCGAAAGCCCCGGCATGGTGGCCCTGCGCGAGCGCGTTCGCCTGCTGGGACGCAGC
AATGCACCGGTGCATATTCGCGGTGAATCGGGCACCGGCAAGGAACTGGTGGCCCGCGCCATACACGATGCAAGCCCACG
TCGGGAAAAGGCATTCATTGCCGTCAACTGCGGCGCCATCCCGGAAAATCTCATGGAGAGCGAGTTTTTTGGTGCCGAAA
AAGGTGCCTATTCCGGCGCCGTGCAACGGCGGGAAGGACTCTTCGTGGCAGCCAATGGTGGCACGCTCTTTCTCGACGAA
ATAGCCGAACTGCCGCTGACCACGCAGGTGAAACTGCTGCGGGTGCTGCAAGAGCGGGTGGTGCGACCGCTGGGTGGCCT
GCGCGAGCAGAGTATCGATATCCGCCTGATCTGTGCCACCCACCGCGATCTGCGCCGGATGGTGGAGGAGGGCACTTTTC
GCGAAGACCTCTTCTACCGCATCAATGTCGTACCCATAGAGATTCCGCCCCTGCGCGAACGCCGCGAGGACATCCCGCTA
CTGGCGCAAACGCTACTGCAGCGCCTCTGCCAGCGGCACGGACGTCCCCCGGCGAACCTCGCCCCCGCTGCGCTGGCCTG
GCTGTCCAACCGCGATTTCCCGGGCAACGTACGTGAGTTGGAGAACCTCCTGGAGCGGGCGCTCGCCCTACAGTCACAGC
CACTGCTGCACCGGGAAGATCTGGAGCCCACGGCGGAGCTCGCGGTGGCGCGGGCGCCACTGCCCGCTGCCGCACCCGCC
GCGGACACGGCCCTCACCAAGCGCCTGGCCGAGGCAGAGTGGCGCTATCTGGCCGACCTGCAGATCCGCCTTGGCGATCG
ACCCGAGGAAATGGCAAAGGCCCTGGGCATAAGCCTACAATCGCTCCATCTGCGTCTCGCCCGGGGAGGATCGAATCGTG
ATTCCTGA
GTGAATGCCAGTGTTCGGCAAAGGAAACGGGCGCTCATCGTCGACGATGAGCCCACCATCGTGGAACTGCTGGGTATCAC
CTTGGAAGGCATGGGGGTCGAGGTCTTGGCTTGCCATAGCCTGGCCGAAGCCTTTGCCGCCCTGGGCAAGGGCCCACCAT
CGCTGTGCCTGACGGATCTGCGCCTGGGCGACGGCTCGGGCATGCAACTCCTGCACAAGGTCCGCGAACTCTACCCGCAG
GTGCCGGTGGCGGTGATCACCGCCTACGCCTCGGCGGAGGGCGCGGTGGAAGCCATGCGCGCCGGCGCCTTCGACTTCAT
GACCAAGCCCATAGAACTGGCACGTCTGCGCCGCCTGGTGAGCGAGGCCATCGCCCTTGGGGAGTTGCCCCGGGAGAGCG
TAGATCTCAGCGAGCGCCTGGTGGGCGAAAGCCCCGGCATGGTGGCCCTGCGCGAGCGCGTTCGCCTGCTGGGACGCAGC
AATGCACCGGTGCATATTCGCGGTGAATCGGGCACCGGCAAGGAACTGGTGGCCCGCGCCATACACGATGCAAGCCCACG
TCGGGAAAAGGCATTCATTGCCGTCAACTGCGGCGCCATCCCGGAAAATCTCATGGAGAGCGAGTTTTTTGGTGCCGAAA
AAGGTGCCTATTCCGGCGCCGTGCAACGGCGGGAAGGACTCTTCGTGGCAGCCAATGGTGGCACGCTCTTTCTCGACGAA
ATAGCCGAACTGCCGCTGACCACGCAGGTGAAACTGCTGCGGGTGCTGCAAGAGCGGGTGGTGCGACCGCTGGGTGGCCT
GCGCGAGCAGAGTATCGATATCCGCCTGATCTGTGCCACCCACCGCGATCTGCGCCGGATGGTGGAGGAGGGCACTTTTC
GCGAAGACCTCTTCTACCGCATCAATGTCGTACCCATAGAGATTCCGCCCCTGCGCGAACGCCGCGAGGACATCCCGCTA
CTGGCGCAAACGCTACTGCAGCGCCTCTGCCAGCGGCACGGACGTCCCCCGGCGAACCTCGCCCCCGCTGCGCTGGCCTG
GCTGTCCAACCGCGATTTCCCGGGCAACGTACGTGAGTTGGAGAACCTCCTGGAGCGGGCGCTCGCCCTACAGTCACAGC
CACTGCTGCACCGGGAAGATCTGGAGCCCACGGCGGAGCTCGCGGTGGCGCGGGCGCCACTGCCCGCTGCCGCACCCGCC
GCGGACACGGCCCTCACCAAGCGCCTGGCCGAGGCAGAGTGGCGCTATCTGGCCGACCTGCAGATCCGCCTTGGCGATCG
ACCCGAGGAAATGGCAAAGGCCCTGGGCATAAGCCTACAATCGCTCCATCTGCGTCTCGCCCGGGGAGGATCGAATCGTG
ATTCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
49.224 |
99.121 |
0.488 |
| pilR | Acinetobacter baumannii strain A118 |
40.773 |
100 |
0.418 |