Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GSS20_RS13795 Genome accession   NZ_CP047995
Coordinates   2957073..2957651 (-) Length   192 a.a.
NCBI ID   WP_140391938.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20150710009     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2952073..2962651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSS20_RS13770 (GSS20_14460) aroB 2952363..2953463 (-) 1101 WP_025546399.1 3-dehydroquinate synthase -
  GSS20_RS13775 (GSS20_14465) aroK 2953495..2954013 (-) 519 WP_005381319.1 shikimate kinase AroK -
  GSS20_RS13780 (GSS20_14470) pilQ 2954202..2955950 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  GSS20_RS13785 (GSS20_14475) pilP 2955982..2956497 (-) 516 WP_005480477.1 pilus assembly protein PilP Machinery gene
  GSS20_RS13790 (GSS20_14480) pilO 2956487..2957080 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  GSS20_RS13795 (GSS20_14485) pilN 2957073..2957651 (-) 579 WP_140391938.1 PilN domain-containing protein Machinery gene
  GSS20_RS13800 (GSS20_14490) pilM 2957635..2958651 (-) 1017 WP_031778293.1 type IV pilus biogenesis protein PilM Machinery gene
  GSS20_RS13805 (GSS20_14495) - 2958794..2961364 (+) 2571 WP_140222517.1 penicillin-binding protein 1A -
  GSS20_RS13810 (GSS20_14500) oxyR 2961420..2962328 (-) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22438.91 Da        Isoelectric Point: 6.6554

>NTDB_id=419154 GSS20_RS13795 WP_140391938.1 2957073..2957651(-) (pilN) [Vibrio parahaemolyticus strain 20150710009]
MLYRINILPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=419154 GSS20_RS13795 WP_140391938.1 2957073..2957651(-) (pilN) [Vibrio parahaemolyticus strain 20150710009]
GTGCTTTATCGCATTAACATATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTTATGTTTAACACGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

82.812

100

0.828
  pilN Vibrio cholerae strain A1552

62.431

94.271

0.589

Multiple sequence alignment