Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GSS20_RS10310 Genome accession   NZ_CP047995
Coordinates   2219227..2220630 (-) Length   467 a.a.
NCBI ID   WP_005461534.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20150710009     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2214227..2225630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSS20_RS10275 (GSS20_10830) moaE 2214800..2215255 (-) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -
  GSS20_RS10280 (GSS20_10835) moaD 2215257..2215514 (-) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  GSS20_RS10285 (GSS20_10840) moaC 2215511..2215990 (-) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  GSS20_RS10290 (GSS20_10845) moaB 2216017..2216529 (-) 513 WP_025546080.1 molybdenum cofactor biosynthesis protein B -
  GSS20_RS10295 (GSS20_10850) moaA 2216631..2217620 (-) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  GSS20_RS10300 (GSS20_10855) - 2217916..2218809 (+) 894 WP_005494500.1 YvcK family protein -
  GSS20_RS10305 (GSS20_10860) luxU 2218886..2219224 (-) 339 WP_021449858.1 quorum-sensing phosphorelay protein LuxU -
  GSS20_RS10310 (GSS20_10865) luxO 2219227..2220630 (-) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GSS20_RS10315 (GSS20_10870) uvrB 2220920..2222950 (-) 2031 WP_005494496.1 excinuclease ABC subunit UvrB -
  GSS20_RS10325 (GSS20_10885) rsxA 2223939..2224517 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  GSS20_RS10330 (GSS20_10890) rsxB 2224521..2225117 (+) 597 WP_005480813.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52173.71 Da        Isoelectric Point: 6.2547

>NTDB_id=419135 GSS20_RS10310 WP_005461534.1 2219227..2220630(-) (luxO) [Vibrio parahaemolyticus strain 20150710009]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=419135 GSS20_RS10310 WP_005461534.1 2219227..2220630(-) (luxO) [Vibrio parahaemolyticus strain 20150710009]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
TTTCCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGATCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTATTGCGTAATA
TCGTGGTGCTTAACAACGGCAAAGAAATTACGTTAGATATGCTGCCACCGCCGCTGAATCAACCATTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
ACAAGCGATTGAGGCGTGTGACGGTAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368

Multiple sequence alignment