Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdE   Type   Machinery gene
Locus tag   GYY_RS09150 Genome accession   NC_015847
Coordinates   1712718..1712939 (-) Length   73 a.a.
NCBI ID   WP_013999970.1    Uniprot ID   G0H3W6
Organism   Methanococcus maripaludis X1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1707718..1717939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYY_RS09130 (GYY_09260) - 1708511..1709797 (-) 1287 WP_013999966.1 phosphoadenosine phosphosulfate reductase family protein -
  GYY_RS09135 (GYY_09265) recJ 1709847..1711250 (-) 1404 WP_013999967.1 single-stranded-DNA-specific exonuclease RecJ -
  GYY_RS09700 - 1711383..1711673 (+) 291 WP_237698167.1 hypothetical protein -
  GYY_RS09705 - 1711636..1712022 (+) 387 WP_237698168.1 hypothetical protein -
  GYY_RS09145 (GYY_09275) - 1712023..1712706 (-) 684 WP_013999969.1 metallophosphoesterase -
  GYY_RS09150 (GYY_09280) epdE 1712718..1712939 (-) 222 WP_013999970.1 class III signal peptide-containing protein Machinery gene
  GYY_RS09155 (GYY_09285) - 1713348..1713545 (+) 198 WP_013999971.1 AtpZ/AtpI family protein -
  GYY_RS09160 (GYY_09290) - 1713563..1714564 (+) 1002 WP_013999972.1 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 -
  GYY_RS09165 (GYY_09295) - 1714582..1714788 (+) 207 WP_011171631.1 ferredoxin family protein -
  GYY_RS09170 (GYY_09300) - 1714799..1715518 (+) 720 WP_013999973.1 hypothetical protein -
  GYY_RS09175 (GYY_09305) comE 1715496..1716053 (-) 558 WP_013999974.1 sulfopyruvate decarboxylase subunit beta -
  GYY_RS09180 (GYY_09310) - 1716055..1716723 (-) 669 WP_013999975.1 HisA/HisF family protein -

Sequence

Protein


Download         Length: 73 a.a.        Molecular weight: 7576.57 Da        Isoelectric Point: 6.1356

>NTDB_id=41910 GYY_RS09150 WP_013999970.1 1712718..1712939(-) (epdE) [Methanococcus maripaludis X1]
MKFLEKLTSKKGQVSMEIGILVAAAVAVAAIAAYFYASNVSNTGKQITNSTNQTTQALADAISDATSELSSYA

Nucleotide


Download         Length: 222 bp        

>NTDB_id=41910 GYY_RS09150 WP_013999970.1 1712718..1712939(-) (epdE) [Methanococcus maripaludis X1]
ATGAAATTTTTAGAAAAACTAACATCAAAAAAAGGTCAGGTATCAATGGAAATTGGTATCCTCGTTGCAGCAGCAGTTGC
AGTTGCAGCAATCGCAGCATACTTCTACGCAAGCAACGTTAGCAACACTGGAAAACAGATTACAAATTCGACAAACCAAA
CAACTCAGGCACTTGCTGATGCAATATCTGACGCTACATCAGAACTGTCTAGCTACGCATAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0H3W6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdE Methanococcus maripaludis strain DSM 2067

91.781

100

0.918
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

69.014

97.26

0.671

Multiple sequence alignment