Detailed information    

insolico Bioinformatically predicted

Overview

Name   MMJJ_RS05685   Type   Machinery gene
Locus tag   GYY_RS03850 Genome accession   NC_015847
Coordinates   711657..711878 (+) Length   73 a.a.
NCBI ID   WP_013999115.1    Uniprot ID   G0H4L8
Organism   Methanococcus maripaludis X1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 706657..716878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYY_RS03830 - 707451..708074 (-) 624 WP_048055758.1 hypothetical protein -
  GYY_RS03835 (GYY_03845) - 708232..708741 (-) 510 WP_011170475.1 HEPN domain-containing protein -
  GYY_RS03840 (GYY_03850) - 708728..709345 (-) 618 WP_013999113.1 nucleotidyltransferase domain-containing protein -
  GYY_RS03845 (GYY_03855) - 709577..711235 (+) 1659 WP_013999114.1 SulP family inorganic anion transporter -
  GYY_RS03850 (GYY_03860) MMJJ_RS05685 711657..711878 (+) 222 WP_013999115.1 class III signal peptide-containing protein Machinery gene
  GYY_RS03855 (GYY_03865) - 711880..712500 (-) 621 WP_013999116.1 helix-turn-helix domain-containing protein -
  GYY_RS03860 (GYY_03870) - 712514..713239 (-) 726 WP_048055759.1 hypothetical protein -
  GYY_RS03865 (GYY_03875) - 713745..714206 (+) 462 WP_013999118.1 hypothetical protein -
  GYY_RS03870 (GYY_03880) - 714247..714597 (+) 351 WP_013999119.1 hypothetical protein -
  GYY_RS03875 (GYY_03890) - 714792..715496 (+) 705 WP_013999121.1 ABC transporter ATP-binding protein -
  GYY_RS03880 (GYY_03895) - 715501..716802 (+) 1302 WP_013999122.1 COG1361 S-layer family protein -

Sequence

Protein


Download         Length: 73 a.a.        Molecular weight: 7738.91 Da        Isoelectric Point: 7.9903

>NTDB_id=41904 GYY_RS03850 WP_013999115.1 711657..711878(+) (MMJJ_RS05685) [Methanococcus maripaludis X1]
MLKKLYSKKGQVSMEIGILVASAVAVSAIASYFYAVNVKYSDTHAGETAKNTSNALINVTENVCGNISEITIP

Nucleotide


Download         Length: 222 bp        

>NTDB_id=41904 GYY_RS03850 WP_013999115.1 711657..711878(+) (MMJJ_RS05685) [Methanococcus maripaludis X1]
ATGCTTAAAAAATTATATTCAAAAAAAGGACAGGTTTCAATGGAAATAGGGATCTTGGTTGCGTCCGCAGTTGCAGTTTC
AGCAATTGCAAGCTATTTTTATGCAGTAAATGTTAAATATTCAGATACCCATGCTGGTGAAACTGCAAAAAATACAAGTA
ATGCCCTTATAAATGTTACAGAAAATGTTTGTGGCAATATTTCTGAAATAACTATTCCCTAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0H4L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

56.944

98.63

0.562
  epdE Methanococcus maripaludis strain DSM 2067

44.776

91.781

0.411

Multiple sequence alignment