Detailed information NTG0418936

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GWC92_RS02155
• Genome accession: NZ_CP047981
• Coordinates: 436995..437870 (-)
• Length: 291 a.a.
• NCBI ID: WP_113069551.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain NY4617
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 431995..442870

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GWC92_RS02130 (GWC92_02130)	-	433742..434926 (+)	1185	WP_113069549.1	tetratricopeptide repeat protein	-
GWC92_RS02135 (GWC92_02135)	mutT	434935..435339 (+)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
GWC92_RS02140 (GWC92_02140)	yacG	435397..435591 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
GWC92_RS02145 (GWC92_02145)	zapD	435602..436324 (-)	723	WP_010675825.1	cell division protein ZapD	-
GWC92_RS02150 (GWC92_02150)	coaE	436362..436976 (-)	615	WP_113069550.1	dephospho-CoA kinase	-
GWC92_RS02155 (GWC92_02155)	pilD	436995..437870 (-)	876	WP_113069551.1	A24 family peptidase	Machinery gene
GWC92_RS02160 (GWC92_02160)	pilC	437948..439189 (-)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
GWC92_RS02165 (GWC92_02165)	pilB	439317..441023 (-)	1707	WP_041213997.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
GWC92_RS02170 (GWC92_02170)	-	441027..441572 (-)	546	WP_113069552.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
GWC92_RS02175 (GWC92_02175)	nadC	441883..442746 (-)	864	WP_042864860.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32095.19 Da
• Isoelectric Point: 6.5959

>NTDB_id=418936 GWC92_RS02155 WP_113069551.1 436995..437870(-) (pilD) [Aeromonas caviae strain NY4617]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGDFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=418936 GWC92_RS02155 WP_113069551.1 436995..437870(-) (pilD) [Aeromonas caviae strain NY4617]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGTTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTTGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTCTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGATTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ATGGCGACTTCAAACTGCTGGCGGCACTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.417	98.969	0.598
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	51.971	95.876	0.498
pilD	Acinetobacter nosocomialis M2	51.971	95.876	0.498
pilD	Neisseria gonorrhoeae MS11	50.958	89.691	0.457