Detailed information NTG0418933

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GWK28_RS19945
• Genome accession: NZ_CP047973
• Coordinates: 3531603..3532463 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152283.1
• Uniprot ID: A0A009QK25
• Organism: Acinetobacter baumannii strain DETAB-P2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3526603..3537463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GWK28_RS16835 (GWK28_16855)	secG	3527208..3527537 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
GWK28_RS16840 (GWK28_16860)	tpiA	3527550..3528344 (-)	795	WP_000016932.1	triose-phosphate isomerase	-
GWK28_RS16845 (GWK28_16865)	pilB	3528635..3530347 (+)	1713	WP_001274992.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GWK28_RS16850 (GWK28_16870)	pilC	3530377..3531603 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
GWK28_RS19945 (GWK28_16875)	pilD	3531603..3532463 (+)	861	WP_001152283.1	A24 family peptidase	Machinery gene
GWK28_RS16860 (GWK28_16880)	coaE	3532465..3533061 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
GWK28_RS16865 (GWK28_16885)	-	3533058..3533972 (-)	915	WP_000075020.1	DMT family transporter	-
GWK28_RS16870 (GWK28_16890)	rlmB	3534008..3534757 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
GWK28_RS16875 (GWK28_16895)	-	3534859..3535185 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
GWK28_RS16880 (GWK28_16900)	-	3535262..3536572 (-)	1311	WP_000753283.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32144.59 Da
• Isoelectric Point: 7.1041

>NTDB_id=418933 GWK28_RS19945 WP_001152283.1 3531603..3532463(+) (pilD) [Acinetobacter baumannii strain DETAB-P2]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=418933 GWK28_RS19945 WP_001152283.1 3531603..3532463(+) (pilD) [Acinetobacter baumannii strain DETAB-P2]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A009QK25

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441