Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GWK28_RS01470 Genome accession   NZ_CP047973
Coordinates   314654..315295 (+) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain DETAB-P2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 309654..320295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK28_RS01450 (GWK28_01450) - 309700..310032 (+) 333 WP_187142582.1 hypothetical protein -
  GWK28_RS01455 (GWK28_01455) - 310035..310859 (+) 825 WP_002125608.1 putative RNA methyltransferase -
  GWK28_RS01460 (GWK28_01460) ponA 310877..313432 (-) 2556 WP_187142583.1 penicillin-binding protein PBP1a -
  GWK28_RS01465 (GWK28_01465) pilM 313596..314654 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  GWK28_RS01470 (GWK28_01470) pilN 314654..315295 (+) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  GWK28_RS01475 (GWK28_01475) pilO 315292..316032 (+) 741 WP_187142584.1 type 4a pilus biogenesis protein PilO Machinery gene
  GWK28_RS01480 (GWK28_01480) pilP 316043..316570 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  GWK28_RS01485 (GWK28_01485) pilQ 316633..318798 (+) 2166 WP_002062175.1 type IV pilus secretin PilQ family protein Machinery gene
  GWK28_RS01490 (GWK28_01490) aroK 318810..319379 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=418888 GWK28_RS01470 WP_000201224.1 314654..315295(+) (pilN) [Acinetobacter baumannii strain DETAB-P2]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=418888 GWK28_RS01470 WP_000201224.1 314654..315295(+) (pilN) [Acinetobacter baumannii strain DETAB-P2]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment