Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CE10_RS15730 Genome accession   NC_017646
Coordinates   3097870..3098607 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O7:K1 str. CE10     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3092870..3103607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CE10_RS15715 (CE10_3027) clpC 3093324..3095897 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CE10_RS15720 (CE10_3028) yfiH 3096027..3096758 (-) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  CE10_RS15725 (CE10_3029) rluD 3096755..3097735 (-) 981 WP_000079097.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CE10_RS15730 (CE10_3030) comL 3097870..3098607 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CE10_RS15735 (CE10_3031) - 3098657..3100003 (-) 1347 WP_000483766.1 IS4-like element IS4 family transposase -
  CE10_RS15745 (CE10_3032) raiA 3100316..3100657 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CE10_RS30175 pheL 3100761..3100808 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CE10_RS15750 (CE10_3033) pheA 3100907..3102067 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  CE10_RS15755 (CE10_3034) tyrA 3102110..3103231 (-) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=41885 CE10_RS15730 WP_000197686.1 3097870..3098607(+) (comL) [Escherichia coli O7:K1 str. CE10]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=41885 CE10_RS15730 WP_000197686.1 3097870..3098607(+) (comL) [Escherichia coli O7:K1 str. CE10]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment