Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SynA15127_RS00100 Genome accession   NZ_CP047948
Coordinates   22774..24534 (-) Length   586 a.a.
NCBI ID   WP_255475520.1    Uniprot ID   A0A7G8GH45
Organism   Synechococcus sp. A15-127     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 17774..29534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynA15127_RS00080 (SynA15127_00016) msrB 18696..19199 (+) 504 WP_186484520.1 peptide-methionine (R)-S-oxide reductase MsrB -
  SynA15127_RS00085 (SynA15127_00017) - 19234..20439 (+) 1206 WP_370594004.1 NAD(P)/FAD-dependent oxidoreductase -
  SynA15127_RS00090 (SynA15127_00018) - 20414..21664 (-) 1251 WP_186484522.1 type II secretion system F family protein -
  SynA15127_RS00095 (SynA15127_00019) pilT 21687..22763 (-) 1077 WP_186485493.1 type IV pilus twitching motility protein PilT Machinery gene
  SynA15127_RS00100 (SynA15127_00020) pilB/pilB1 22774..24534 (-) 1761 WP_255475520.1 GspE/PulE family protein Machinery gene
  SynA15127_RS00105 (SynA15127_00021) grpE 24698..25378 (+) 681 WP_186484523.1 nucleotide exchange factor GrpE -
  SynA15127_RS00110 (SynA15127_00022) dnaJ 25378..26508 (+) 1131 WP_186484524.1 molecular chaperone DnaJ -
  SynA15127_RS00115 (SynA15127_00023) - 26505..26732 (+) 228 WP_043693985.1 sulfurtransferase TusA family protein -
  SynA15127_RS00120 (SynA15127_00024) rsgA 26739..27638 (+) 900 WP_186484525.1 ribosome small subunit-dependent GTPase A -
  SynA15127_RS00125 (SynA15127_00025) - 27613..27954 (-) 342 WP_186484526.1 YbaB/EbfC family nucleoid-associated protein -
  SynA15127_RS00130 (SynA15127_00026) murB 27979..28872 (-) 894 WP_186485495.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64710.34 Da        Isoelectric Point: 4.8758

>NTDB_id=418658 SynA15127_RS00100 WP_255475520.1 22774..24534(-) (pilB/pilB1) [Synechococcus sp. A15-127]
MLQQTVPGPKQLSCSWQLLQDGSTGLDADQWRALRALPIAIDDDHLDIAVPSHWDEQDRSEFLAQHPGNGRQIRLHHSLE
SDLKAALQKTETREAVEPVPTASPSVDRAVEETAATYLEEFTVDGVLEEDPEELAEQSSGTIDLEASLRDADASPVVSLV
DRILLQAMSVGASDIHVEPQQKGLRLRYRQDGVLQQYIEPLPGRLIPAVTSRFKILADLDIAERRQAQDGRIRRRYRDRV
IDFRVSTLPSRYGEKVVLRLLDSDSTQLGLDQLISDPITLDLVRELGSKPFGMILVTGPTGSGKSTTLYSLLAERNDPGI
NISTVEDPIEYTLPGITQSQVNRDKGFDFATALRAFMRQDPDVLLVGETRDLETAKTAIEAALTGHLVLSTLHANDAPST
IARLDEMGVEPFMVSAALIGIVSQRLMRRVCTACREPYRPSQMELGRFGLMASDEAKVTFFRAQHQTPGTSVCPRCKGSG
YKGRVGVYEVLRMNEDIATAVSKGATTDVIRQLALESGMKTLLRYSLELVRQGHTTLEEVGRMILTDSGLESERRARALS
TMTCSGCGAGLQESWLECPYCLTERQ

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=418658 SynA15127_RS00100 WP_255475520.1 22774..24534(-) (pilB/pilB1) [Synechococcus sp. A15-127]
TTGCTGCAGCAGACCGTCCCCGGTCCGAAGCAGCTCAGCTGCTCGTGGCAGCTTCTCCAGGACGGAAGCACAGGACTGGA
CGCGGATCAATGGCGCGCACTTCGGGCTCTGCCGATTGCGATCGACGACGACCATCTCGACATCGCCGTCCCCAGCCACT
GGGATGAACAGGATCGAAGCGAGTTCCTGGCTCAGCATCCTGGCAACGGTCGGCAGATCCGCCTGCATCACTCGCTGGAA
AGCGATCTGAAGGCCGCACTCCAGAAGACGGAGACCCGCGAAGCCGTCGAGCCGGTCCCGACGGCCTCCCCCTCGGTGGA
CCGGGCCGTCGAAGAGACGGCTGCCACCTATCTGGAGGAATTCACCGTGGATGGGGTGCTCGAGGAGGACCCTGAAGAGC
TGGCCGAGCAGAGCAGCGGCACGATCGACCTGGAGGCGAGTCTGCGGGATGCCGACGCCTCACCGGTGGTGAGTCTCGTG
GACAGGATCCTGCTGCAGGCAATGTCCGTCGGCGCAAGTGACATCCACGTCGAACCCCAGCAGAAGGGTCTGAGGCTTCG
CTACCGACAGGATGGTGTGCTTCAGCAATACATCGAGCCACTGCCGGGGCGGTTGATCCCTGCAGTCACCTCCCGCTTCA
AGATCCTGGCGGACCTGGACATCGCCGAACGACGTCAGGCTCAGGACGGACGCATCCGCCGCCGGTATCGAGACCGGGTG
ATCGACTTCCGGGTCAGCACCCTTCCGAGCCGTTACGGCGAGAAGGTGGTGCTGCGTCTTCTGGACAGCGATTCAACGCA
GCTCGGACTGGATCAGCTGATCTCCGATCCAATCACCCTCGACCTCGTGCGTGAACTGGGATCTAAACCGTTCGGGATGA
TTCTGGTGACCGGCCCCACCGGATCAGGCAAATCGACAACGCTCTACTCGCTGCTGGCGGAGCGAAACGACCCCGGCATC
AACATCTCCACCGTCGAGGATCCGATCGAATACACGCTGCCTGGAATCACTCAGAGCCAGGTGAACCGGGATAAGGGATT
CGACTTCGCGACAGCCCTGAGAGCCTTCATGCGACAGGACCCGGATGTGCTGCTGGTGGGGGAAACCCGCGATCTGGAAA
CCGCGAAGACTGCCATCGAAGCCGCTCTCACGGGCCATCTGGTGCTCAGCACGCTTCATGCCAACGATGCCCCGAGCACG
ATCGCCCGGCTGGACGAGATGGGTGTGGAGCCCTTCATGGTCTCTGCTGCCCTGATCGGGATCGTGTCCCAGCGTCTGAT
GCGCCGGGTGTGCACCGCTTGCCGGGAGCCCTACCGACCCAGCCAGATGGAGCTTGGACGCTTCGGTCTGATGGCAAGCG
ACGAAGCGAAGGTGACCTTTTTCCGGGCCCAACACCAAACGCCGGGAACCTCCGTCTGTCCCCGCTGCAAGGGCAGTGGT
TACAAGGGCCGCGTCGGTGTCTATGAAGTGCTGCGGATGAATGAGGACATTGCAACGGCAGTCTCCAAGGGGGCGACCAC
CGACGTGATCAGGCAGCTGGCCCTGGAATCCGGAATGAAGACGCTGCTGAGGTACAGCCTGGAGCTGGTGCGACAGGGCC
ACACCACCCTCGAGGAGGTGGGCCGCATGATCCTCACGGATTCAGGTCTGGAATCCGAGCGGAGAGCCCGGGCCCTCAGC
ACAATGACGTGCAGCGGTTGTGGCGCCGGCCTTCAGGAGAGCTGGCTCGAATGTCCCTACTGCCTGACGGAACGCCAGTG
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(163-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8GH45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

61.653

80.546

0.497

Multiple sequence alignment