Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   M594_RS08880 Genome accession   NZ_CP047883
Coordinates   1855205..1856974 (-) Length   589 a.a.
NCBI ID   WP_173876604.1    Uniprot ID   A0A6M9FEE1
Organism   Streptococcus mitis strain S022-V3-A4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1850205..1861974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS08855 (M594_08895) - 1850254..1851330 (-) 1077 WP_049491929.1 replication initiator protein A -
  M594_RS08860 (M594_08900) - 1851617..1852291 (-) 675 WP_173876601.1 LiaF transmembrane domain-containing protein -
  M594_RS08865 (M594_08905) - 1852296..1852742 (-) 447 WP_000776606.1 LytTR family DNA-binding domain-containing protein -
  M594_RS08870 (M594_08910) - 1852856..1853359 (-) 504 WP_173876602.1 phosphatase PAP2 family protein -
  M594_RS08875 (M594_08915) rcrQ 1853455..1855215 (-) 1761 WP_173876603.1 ABC transporter ATP-binding protein Regulator
  M594_RS08880 (M594_08920) rcrP 1855205..1856974 (-) 1770 WP_173876604.1 ABC transporter ATP-binding protein Regulator
  M594_RS08885 (M594_08925) - 1856949..1857419 (-) 471 WP_173876605.1 MarR family winged helix-turn-helix transcriptional regulator -
  M594_RS08890 (M594_08930) - 1857597..1858313 (-) 717 WP_000532877.1 YebC/PmpR family DNA-binding transcriptional regulator -
  M594_RS08895 (M594_08935) - 1858410..1859780 (-) 1371 WP_173876606.1 MATE family efflux transporter -
  M594_RS08900 (M594_08940) recA 1859895..1861049 (-) 1155 WP_173876607.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65404.78 Da        Isoelectric Point: 6.0399

>NTDB_id=418276 M594_RS08880 WP_173876604.1 1855205..1856974(-) (rcrP) [Streptococcus mitis strain S022-V3-A4]
MKKLAKRISGKEWGMILLAILFTCFSVYLELEVPTYISKITDLLGTQGTNLDELWQPASMMVGMSFLAFLSAVAVGFFAS
RVAASYTSRLRSDIFNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWA
VLVAVIVNVLMTTVLMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEEYQNEKFASANDELTRLNLFVNRLMAI
LNPIMMGISSGLSVAIYWIGAYVINDAAATARLPLFSDMIVFMSYAMQVVMGFLLMGALFIVLPRTMVSAKRINQVLDLH
SSIQNPAQVQLADENLKGQVEFKDVTFRYAANSEAVIEHVSFRAEAGQTVAFIGSTGSGKSTLVNLIPRFYDVSEGEILV
DGVNVQDYDLKDLRNKVGYIPQKAVLFSGDVKGNLDFGHSQETPLSEQAMWQALELAQSKNFIEDKEAGLESEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRVLRQELAEKTKSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLANNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=418276 M594_RS08880 WP_173876604.1 1855205..1856974(-) (rcrP) [Streptococcus mitis strain S022-V3-A4]
ATGAAGAAATTAGCCAAACGAATTAGTGGAAAAGAATGGGGGATGATTTTACTAGCCATTCTCTTTACCTGCTTTTCGGT
TTATCTAGAGTTGGAAGTGCCGACCTATATCTCTAAAATCACTGATTTACTAGGAACTCAGGGAACCAACTTGGATGAGT
TATGGCAGCCGGCAAGCATGATGGTGGGAATGTCCTTTCTAGCCTTCTTATCCGCAGTTGCAGTTGGATTTTTTGCTTCC
CGAGTGGCTGCTTCTTATACTAGTAGGCTGAGAAGTGATATTTTTAATCGAGTTTTAGACTACTCACAGACAGAGATTAA
GAAATTCTCTATTCCTAGTCTCTTAACGCGTACCACTAATGATATTACTCAAGTTCAGATGTTGATTACCATGGGCTTGC
AAGTAGTTACGCGTGGTCCAATTATGGCTATCTGGGCTATCGGGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCC
GTACTTGTGGCAGTGATTGTCAACGTTTTAATGACGACTGTTTTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCA
GGGGTTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTTAACAGGTATTCGTGTCGTTCGCGCCTACAATGCTGAAG
AATACCAAAATGAAAAATTTGCATCAGCAAATGATGAATTGACACGCTTGAATTTGTTTGTCAACCGTCTTATGGCTATT
TTGAACCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTGGCGATTTACTGGATTGGGGCCTATGTGATTAACGACGC
TGCTGCGACAGCACGTCTGCCTCTCTTTAGTGACATGATTGTTTTCATGTCTTATGCCATGCAGGTTGTCATGGGCTTCC
TTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTTAGATTTGCAT
TCTTCTATCCAAAACCCTGCTCAAGTGCAGCTGGCTGATGAAAACCTCAAAGGTCAGGTCGAGTTTAAGGATGTGACCTT
CCGCTATGCGGCGAATTCGGAGGCGGTTATTGAGCATGTTAGCTTTAGAGCAGAAGCTGGTCAAACAGTGGCCTTTATTG
GGTCAACAGGTTCTGGTAAATCAACTCTAGTCAATCTGATTCCACGTTTCTACGATGTGTCAGAAGGAGAAATTCTGGTG
GATGGTGTCAATGTTCAAGACTATGACTTGAAAGATTTGCGCAACAAGGTTGGTTATATTCCTCAGAAAGCGGTTCTCTT
TTCAGGTGATGTCAAGGGTAATCTAGACTTTGGACACAGTCAAGAAACACCGCTTAGTGAGCAGGCTATGTGGCAAGCTC
TGGAATTGGCCCAGTCTAAGAACTTTATCGAAGACAAGGAAGCGGGCTTAGAGTCAGAAGTGGCCCAAGGAGGAACCAAC
TTCTCAGGTGGCCAAAGACAGCGTCTGGCCATTGCGCGTGCCTTGGCTCGGAAGCCAGAAATCCTCATCTTTGATGACTC
CTTCTCAGCCTTGGATTACAAGACAGACCGTGTCCTACGCCAAGAGCTAGCAGAGAAAACCAAGTCTATGACCAAGCTTA
TCGTTGCACAGCGTATTTCAACAATTATGGATGCAGATTTGATTTTGGTCTTGGATCAAGGAAAAGTCGTGGGGCAAGGC
ACCCACAAGGAACTTCTAGCTAATAACGAAGTTTACCAAGAAATTGCCTATTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(358-507)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.722

100

0.681

Multiple sequence alignment