Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   M594_RS08875 Genome accession   NZ_CP047883
Coordinates   1853455..1855215 (-) Length   586 a.a.
NCBI ID   WP_173876603.1    Uniprot ID   A0A6M9F820
Organism   Streptococcus mitis strain S022-V3-A4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1848455..1860215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS08835 (M594_08880) - 1848848..1849156 (-) 309 WP_000564688.1 hypothetical protein -
  M594_RS08840 (M594_08885) - 1849446..1849661 (-) 216 WP_049491932.1 helix-turn-helix transcriptional regulator -
  M594_RS10180 - 1849664..1849798 (-) 135 WP_000475613.1 hypothetical protein -
  M594_RS08845 (M594_08890) - 1849822..1850088 (-) 267 WP_000522441.1 hypothetical protein -
  M594_RS08850 - 1850093..1850260 (-) 168 WP_000910111.1 hypothetical protein -
  M594_RS08855 (M594_08895) - 1850254..1851330 (-) 1077 WP_049491929.1 replication initiator protein A -
  M594_RS08860 (M594_08900) - 1851617..1852291 (-) 675 WP_173876601.1 LiaF transmembrane domain-containing protein -
  M594_RS08865 (M594_08905) - 1852296..1852742 (-) 447 WP_000776606.1 LytTR family DNA-binding domain-containing protein -
  M594_RS08870 (M594_08910) - 1852856..1853359 (-) 504 WP_173876602.1 phosphatase PAP2 family protein -
  M594_RS08875 (M594_08915) rcrQ 1853455..1855215 (-) 1761 WP_173876603.1 ABC transporter ATP-binding protein Regulator
  M594_RS08880 (M594_08920) rcrP 1855205..1856974 (-) 1770 WP_173876604.1 ABC transporter ATP-binding protein Regulator
  M594_RS08885 (M594_08925) - 1856949..1857419 (-) 471 WP_173876605.1 MarR family winged helix-turn-helix transcriptional regulator -
  M594_RS08890 (M594_08930) - 1857597..1858313 (-) 717 WP_000532877.1 YebC/PmpR family DNA-binding transcriptional regulator -
  M594_RS08895 (M594_08935) - 1858410..1859780 (-) 1371 WP_173876606.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64839.56 Da        Isoelectric Point: 4.8583

>NTDB_id=418275 M594_RS08875 WP_173876603.1 1853455..1855215(-) (rcrQ) [Streptococcus mitis strain S022-V3-A4]
MENKKMSLWEQSKPYLAGLQFALLIAFLATILSNIITVYGPTRIKEMTNIIASGLETSVDVAAVAAIGGFLAVIYVIGLL
SNYLQAFLFTTAIQRFSERLRRAIAEKINRLPLGYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSSLLVVAVLVTM
FGMNWILALVTVVSTLIGFAFVSVFMGKSQGFFKSQQQDLAAVNGYVEEMYSGHNVVTSYNAIESTKEEFAKLNHRLYDS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALNGQISIGIIVAFMAYVRIFSQPLSQIAQGITSLQQASAAMGRVFE
FLGEEEMEDESHKERQLSYMKGQVVFDRVSFGYTPERTIINDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIRNNLIYNQKDISDERVIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDELMAQAGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=418275 M594_RS08875 WP_173876603.1 1853455..1855215(-) (rcrQ) [Streptococcus mitis strain S022-V3-A4]
ATGGAAAATAAGAAAATGTCTCTTTGGGAACAGAGTAAACCCTATCTTGCAGGTCTCCAGTTTGCCCTTCTAATCGCCTT
TCTAGCAACAATCTTATCCAATATCATTACTGTATATGGTCCAACCCGCATCAAGGAAATGACTAATATTATTGCCAGTG
GTTTGGAAACAAGTGTGGATGTCGCGGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTCATCTATGTGATTGGACTTTTA
TCAAATTATTTGCAGGCCTTTCTGTTTACAACAGCTATTCAACGTTTTTCAGAGCGTTTGAGAAGAGCTATTGCAGAGAA
AATCAATCGCCTTCCATTAGGATATTTTGATGGGCATTCTCAAGGAGATACCTTGTCTCGTGTGACTAATGACGTTGACA
CTGCAGCCCAATCCCTCAATCAAAGTCTAGGAACAGTTCTTTCATCTAGCTTACTGGTCGTGGCTGTCTTAGTAACCATG
TTTGGTATGAACTGGATTTTAGCTTTGGTGACGGTTGTTTCAACTCTTATTGGTTTTGCTTTCGTGTCTGTCTTTATGGG
CAAATCACAGGGATTCTTTAAAAGTCAGCAACAGGATTTGGCAGCTGTCAATGGTTATGTGGAAGAAATGTACTCTGGTC
ATAATGTGGTGACCAGCTACAATGCTATCGAGAGCACGAAAGAAGAGTTTGCGAAATTAAACCATCGTCTGTATGATAGT
ATCTGGAAATCTCAGTTTATTTCAGGGATTATGATGCCGATTATGATGTTTATTGGGAACTTTAGCTATGCCTTGGTGAT
TATTGTTGGTGCAGCTTTGGCTCTGAATGGGCAGATTAGTATCGGGATTATCGTTGCCTTTATGGCCTACGTTCGTATCT
TTTCTCAGCCCCTTTCCCAAATTGCTCAAGGGATTACCAGTCTTCAGCAAGCTAGCGCAGCCATGGGACGTGTCTTCGAA
TTCTTAGGTGAAGAGGAAATGGAAGATGAATCTCATAAAGAAAGACAGCTGAGCTATATGAAAGGGCAAGTGGTCTTTGA
TCGAGTTTCCTTTGGTTATACACCAGAGCGAACCATCATTAATGACTTTTCTGCGACTGCTCATGCAGGTCAAAAGGTTG
CCATTGTCGGACCGACCGGAGCTGGGAAGACAACTATTGTCAATCTTTTGATGAAGTTCTATGAGATTGATAAGGGAAGC
ATCCGTATCGATGGTGTGGATACCAAGGAGATGAAGCGTTCGGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGACAC
TTGGCTCTTTGAAGGCACTATCCGAAACAATCTTATCTATAACCAAAAGGATATTAGCGATGAGCGCGTGATTGAAGCCA
GCAAGGCTGTAGGGATTCATCACTTTATTATGACCCTCCCAGATGGTTACGATACCGTCTTGGACGATACAGTGACCTTG
TCTGTCGGACAAAAGCAACTCTTGACCATTGCTCGCGCTTTGCTGAAAGATGCACCACTCCTAATCCTAGATGAAGCGAC
CTCTTCGGTTGATACACGGACGGAAGAATTAATCCAGAAAGCCATGGACCGTTTGATGGAGGGAAGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCAACCATCCGTAATGCGGATCTGATTCTGGTTATGAAAGATGGGAATATCATCGAGCAAGGAAAT
CATGATGAGCTGATGGCGCAAGCTGGTTTCTACGCTGACCTCTACAACAGTCAATTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.61

99.659

0.664

Multiple sequence alignment