Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   M594_RS06275 Genome accession   NZ_CP047883
Coordinates   1275917..1277719 (-) Length   600 a.a.
NCBI ID   WP_000244089.1    Uniprot ID   A0A081SCJ2
Organism   Streptococcus mitis strain S022-V3-A4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1270917..1282719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS06260 (M594_06280) ftsW 1272813..1274036 (-) 1224 WP_173876261.1 cell division peptidoglycan polymerase FtsW -
  M594_RS06265 (M594_06285) prsA 1274197..1275135 (-) 939 WP_004254642.1 peptidylprolyl isomerase PrsA -
  M594_RS06270 (M594_06290) - 1275202..1275915 (-) 714 WP_173876262.1 O-methyltransferase -
  M594_RS06275 (M594_06295) pepF 1275917..1277719 (-) 1803 WP_000244089.1 oligoendopeptidase F Regulator
  M594_RS06280 (M594_06300) coiA 1277738..1278691 (-) 954 WP_000495920.1 competence protein CoiA Machinery gene
  M594_RS06285 (M594_06305) tehB 1278764..1279624 (-) 861 WP_173876263.1 SAM-dependent methyltransferase TehB -
  M594_RS06290 (M594_06310) smpB 1279639..1280106 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  M594_RS06295 (M594_06315) rnr 1280069..1282423 (-) 2355 WP_173876264.1 ribonuclease R -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69921.80 Da        Isoelectric Point: 4.5649

>NTDB_id=418258 M594_RS06275 WP_000244089.1 1275917..1277719(-) (pepF) [Streptococcus mitis strain S022-V3-A4]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDITEQLETVAQYEGHLLDSADSLLEITEFSLEMERQMEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYEPEFMEISEEQYADFLEAQPKLQVYQHYFDKLLQGKDHVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPYVLDDDGKEVQLSHGTYTRLMESKNREVRRGAYQALYATYQQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLNLRSKILGISDLKMYDVYTPLSSVEYSFTYREALK
KAEDALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGNQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGMA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=418258 M594_RS06275 WP_000244089.1 1275917..1277719(-) (pepF) [Streptococcus mitis strain S022-V3-A4]
ATGGTATTACAAAGACATGAAATAAATGAAAAAGATACATGGGATCTATCAACGATCTACCCAACTGACCAGGCTTGGGA
AGAAGCCTTAAAAGATATAACAGAACAATTGGAGACAGTAGCCCAGTATGAAGGCCATCTCCTGGATAGTGCGGATAGTC
TACTCGAAATTACTGAATTTTCTCTTGAAATGGAACGCCAAATGGAGAAGCTTTACGTTTATGCTCATATGAAGAATGAC
CAAGACACACGTGAAGCCAAGTACCAAGAGTACTATGCCAAGGCCATGACTCTCTATAGCCAGCTAGACCAAGCCTTTTC
ATTCTATGAACCTGAATTTATGGAGATTAGTGAAGAGCAGTATGCTGACTTTTTAGAAGCTCAGCCAAAATTGCAGGTTT
ATCAACACTATTTTGACAAGCTTTTGCAAGGCAAGGATCACGTTCTTTCACAACGCGAAGAAGAATTATTGGCTGGAGCT
GGGGAAATCTTTGGTTCGGCAAGTGAAACCTTCGCTATCTTGGACAATGCGGATATTGTGTTCCCTTATGTTCTTGACGA
TGATGGTAAGGAAGTTCAGCTATCTCATGGGACTTACACACGTTTGATGGAGTCTAAAAATCGTGAGGTTCGTCGTGGTG
CCTATCAAGCCCTTTATGCGACTTATCAACAATTCCAACACACCTATGCCAAAACCTTGCAAACCAATGTTAAGGTGCAA
AACTACCGTGCCAAAGTTCGCAACTACAAGAGCGCTCGTCATGCAGCCCTAGCAGCCAATTTTGTTCCAGAGAGTGTTTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGCTATCTTAACCTTCGTTCAAAAATCCTGGGAA
TTTCAGACCTCAAGATGTACGATGTCTACACACCACTTTCTTCTGTTGAATACAGTTTTACCTACCGAGAAGCCTTGAAA
AAGGCAGAAGATGCCTTGGCAGTCTTGGGTGAGGATTACTTGAGCCGTGTCAAACGTGCCTTCAGCGAGCGTTGGATTGA
TGTTTACGAAAACCAAGGCAAGCGTTCAGGTGCTTACTCTGGTGGTTCTTACGATACCAATGCCTTTATGCTACTTAATT
GGCAGGACAATTTAGACAATCTCTTTACCCTTGTTCATGAAACAGGTCACAGTATGCATTCAAGCTATACTCGTGAAACG
CAGCCTTATGTTTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCATCAACTACCAATGAAAATATCTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGATGATGCAACGCGCTTTGCTATTCTCAATAACTTCCTAGATGGTTTCCGTGGGACAGTTT
TCCGTCAAACTCAATTTGCTGAGTTTGAACACGCTATCCACCAAGCGGACCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTAAATAAACTCTACGCAGACTTGAACCAAGAGTATTATGGTTTGAGTAAGGAAGACAATCCTGAAATCCAATACGAGTG
GGCTCGCATTCCACACTTCTACTATAACTACTATGTATACCAATATTCAACTGGCTTTGCAGCAGCCTCAGCCTTGGCTG
AAAAGATTGTCCATGGTAATCAAGAAGACCGTGACCGCTATATCGACTATCTCAAGGCAGGTAAGTCTGACTATCCACTT
AATGTCATGAGAAAAGCTGGAGTTGATATGGAGAAGGAAGACTACCTCAACGATGCCTTTGCAGTCTTTGAACGTCGTTT
AAATGAGTTTGAAGCACTTGTTGAAAAATTGGGAATGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081SCJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

66.946

99.333

0.665

Multiple sequence alignment