Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   H9197_RS05005 Genome accession   NZ_CP060946
Coordinates   1022725..1023381 (-) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli O157:H7 str. EC10     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1017725..1028381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9197_RS04975 (H9197_04950) yecA 1018976..1019641 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  H9197_RS04995 (H9197_04970) pgsA 1020291..1020839 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H9197_RS05000 (H9197_04975) uvrC 1020896..1022728 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  H9197_RS05005 (H9197_04980) letA 1022725..1023381 (-) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  H9197_RS24555 - 1023523..1023594 (+) 72 Protein_988 transcriptional regulator -
  H9197_RS05010 (H9197_04985) yecU 1023677..1023853 (+) 177 WP_000590347.1 protein YecU -
  H9197_RS05015 (H9197_04990) yecF 1023840..1024064 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  H9197_RS05020 (H9197_04995) sdiA 1024131..1024853 (-) 723 WP_001154267.1 transcriptional regulator SdiA -
  H9197_RS05025 (H9197_05000) tcyN 1025083..1025835 (-) 753 WP_001272986.1 L-cystine ABC transporter ATP-binding protein TcyN -
  H9197_RS05030 (H9197_05005) tcyL 1025832..1026500 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  H9197_RS05035 (H9197_05010) dcyD 1026515..1027501 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=418155 H9197_RS05005 WP_000611335.1 1022725..1023381(-) (letA) [Escherichia coli O157:H7 str. EC10]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=418155 H9197_RS05005 WP_000611335.1 1022725..1023381(-) (letA) [Escherichia coli O157:H7 str. EC10]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTTGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486

Multiple sequence alignment